Ss1.1-rjej12b_j11.5
|
CAAGGGTACCGGACGCGTAGTTGCAAGAAGCTAACGGTTGCAGCAGTTTTGTCTAAAGCT
TCACGATGTTTCCCTTGGCCAAAAACGCACTAAGTCGTCTCAGAGTTCGAAACATTCAGC
AAACAATGGCAAGGCAGAACCACCAGAAGCGGGCACCTGATTTCCATGACAAATATGGTA
ATGCTATATTAGCTAGTGGAGCCACTTTCTGTGTTGCTGTATGGGCATATACAGCAACAC
AGATTGGAATAGAATGGAACCTGTCCCCTGTTGGCAGAGTCACCCCAAAGGAATGGAGAG
AAGAATAATCATCCCATCTGGTTTAATACTGAATTGTTTCAAAACCACCTCATAATTGAT
GCCAAGTAAAAGCACTGTGTACCCATTAAAATATGGCATGATTGAAGAAATAAAGTATAT
TTGAAACCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CAAGGGTACCGGACGCGTAGTTGCAAGAAGCTAACGGTTGCAGCAGTTTTGTCTAAAGCT
TCACGATGTTTCCCTTGGCCAAAAACGCACTAAGTCGTCTCAGAGTTCGAAACATTCAGC
AAACAATGGCAAGGCAGAACCACCAGAAGCGGGCACCTGATTTCCATGACAAATATGGTA
ATGCTATATTAGCTAGTGGAGCCACTTTCTGTGTTGCTGTATGGGCATATACAGCAACAC
AGATTGGAATAGAATGGAACCTGTCCCCTGTTGGCAGAGTCACCCCAAAGGAATGGAGAG
AAGAATAATCATCCCATCTGGTTTAATACTGAATTGTTTCAAAACCACCTCATAATTGAT
GCCAAGTAAAAGCACTGTGTACCCATTAAAATATGGCATGATTGAAGAAATAAAGTATAT
TTGAAACCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-464, gnl|bosTau2|chr17 (33342592-33343061) |
|
1-464, gnl|canFam2|chr29 (3323021-3323347) |
|
1-464, gnl|dasNov1|scaffold_9125 (103837-104181) |
|
1-464, gnl|echTel1|scaffold_204117 (3210-2867) |
|
1-464, gnl|hg17|chr1 (159680862-159681203) |
|
1-464, gnl|Hg17|chr22 (33915559-33914947) |
|
1-464, gnl|loxAfr1|scaffold_60147 (25876-26184) |
|
1-464, gnl|Mm7|chr1 (151452934-151452480) |
|
1-464, gnl|mm7|chr6 (50930891-50930567) |
|
1-464, gnl|monDom2|scaffold_19 (25801626-25801299) |
|
1-464, gnl|oryCun1|scaffold_89888 (3586-3929) |
|
1-464, gnl|panTro1|chr1 (141878923-141879264) |
|
1-464, gnl|rheMac2|chr1 (192899227-192899564) |
|
1-464, gnl|rn3|chrX (122144438-122144787) |
| |
|
44-230, gnl|bosTau2|chr11 (62131495-62131309) |
|
44-230, gnl|Hg17|chr1 (54267528-54267713) |
|
44-230, gnl|Mm7|chr2 (91492661-91492475) |
| |
|
271-419, gnl|bosTau2|chr11 (62130756-62130612) |
|
271-419, gnl|Hg17|chr1 (54267746-54267892) |
|
271-419, gnl|Mm7|chr2 (91492443-91492286) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-464, gnl|bosTau2|chr17 (33342592-33343061) |
|
1-464, gnl|canFam2|chr29 (3323021-3323347) |
|
1-464, gnl|dasNov1|scaffold_9125 (103837-104181) |
|
1-464, gnl|echTel1|scaffold_204117 (3210-2867) |
|
1-464, gnl|hg17|chr1 (159680862-159681203) |
|
1-464, gnl|Hg17|chr22 (33915559-33914947) |
|
1-464, gnl|loxAfr1|scaffold_60147 (25876-26184) |
|
1-464, gnl|Mm7|chr1 (151452934-151452480) |
|
1-464, gnl|mm7|chr6 (50930891-50930567) |
|
1-464, gnl|monDom2|scaffold_19 (25801626-25801299) |
|
1-464, gnl|oryCun1|scaffold_89888 (3586-3929) |
|
1-464, gnl|panTro1|chr1 (141878923-141879264) |
|
1-464, gnl|rheMac2|chr1 (192899227-192899564) |
|
1-464, gnl|rn3|chrX (122144438-122144787) |
| |
|
44-230, gnl|bosTau2|chr11 (62131495-62131309) |
|
44-230, gnl|Hg17|chr1 (54267528-54267713) |
|
44-230, gnl|Mm7|chr2 (91492661-91492475) |
| |
|
271-419, gnl|bosTau2|chr11 (62130756-62130612) |
|
271-419, gnl|Hg17|chr1 (54267746-54267892) |
|
271-419, gnl|Mm7|chr2 (91492443-91492286) |
|
duo (3.28322) |
|
nms (1.49701) |
|
col (1.17005) |
|
hlv (0.974795) |
|
fhi (0.847889) |
|
elu (0.770713) |
|
fty (0.703359) |
|
jej (0.692452) |
|
vin (0.665115) |
|
nco (0.646935) |
|
mas (0.630915) |
|
nlu (0.575043) |
|
ebs (0.473205) |
|
ece (0.45861) |
|
cli (0.458435) |
|
bfe (0.449573) |
|
hyp (0.42851) |
|
amn (0.417711) |
|
nca (0.410621) |
|
ute (0.398353) |
|
nbm (0.397298) |
|
fcc (0.39557) |
|
eje (0.395335) |
|
nep (0.36785) |
|
ill (0.351185) |
|
fbs (0.350693) |
|
rec (0.346141) |
|
ecc (0.345105) |
|
jca (0.34188) |
|
eye (0.341006) |
|
csp (0.322373) |
|
sme (0.305437) |
|
cag (0.302389) |
|
nmm (0.265604) |
|
cov (0.264306) |
|
eru (0.240096) |
|
cbe (0.239234) |
|
med (0.232504) |
|
fli (0.202881) |
|
mcp (0.170648) |
|
nje (0.16592) |
|
eli (0.151814) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
kid (0.129735) |
|
ret (0.128733) |
|
pgl (0.118483) |
|
spc (0.113366) |
|
ldo (0.0970026) |
|
duo (3.28322) |
|
nms (1.49701) |
|
col (1.17005) |
|
hlv (0.974795) |
|
fhi (0.847889) |
|
elu (0.770713) |
|
fty (0.703359) |
|
jej (0.692452) |
|
vin (0.665115) |
|
nco (0.646935) |
|
mas (0.630915) |
|
nlu (0.575043) |
|
ebs (0.473205) |
|
ece (0.45861) |
|
cli (0.458435) |
|
bfe (0.449573) |
|
hyp (0.42851) |
|
amn (0.417711) |
|
nca (0.410621) |
|
ute (0.398353) |
|
nbm (0.397298) |
|
fcc (0.39557) |
|
eje (0.395335) |
|
nep (0.36785) |
|
ill (0.351185) |
|
fbs (0.350693) |
|
rec (0.346141) |
|
ecc (0.345105) |
|
jca (0.34188) |
|
eye (0.341006) |
|
csp (0.322373) |
|
sme (0.305437) |
|
cag (0.302389) |
|
nmm (0.265604) |
|
cov (0.264306) |
|
eru (0.240096) |
|
cbe (0.239234) |
|
med (0.232504) |
|
fli (0.202881) |
|
mcp (0.170648) |
|
nje (0.16592) |
|
eli (0.151814) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
kid (0.129735) |
|
ret (0.128733) |
|
pgl (0.118483) |
|
spc (0.113366) |
|
ldo (0.0970026) |
