Non-Coding RNA Search

Ss1.1-rjej12b_k20.5

Sequence:


               
               AACACTTAGTGTTTCCCTAAGTATTTTAGCCTCATCTTCAGCACTCTTGTCCCTTCTAAT
AAGTTTTTTTCTCACCTCCACCTGATTGGGTGACTTTTTTTCCCTTTCTGTGCTAATCCT
TGTTCTTAACTATGAAAATCTGGCCTAGAACTCTTCAAGGACTATTCCTTGATTATCAGA
TTCTGCCTGATTCTATTCTCTCTTAAGCTTTTGTTCTTTCAGCACTTATGTACTCAGTTT
GTATTATATCGGTTTGCACTTGTTAATTGTGTTGCTCTGTAAAAGCGTTCCTCAGTTATC
TCATGTGTATGTATTCTGTCTCTTGAACTAGATTGTAAGCTCCTTGAGAGCAGGGACCAT
GTCTTTTACTTTATTTTTTTGTATTCCCCGGACAGTGCCCAGTACAGTGCTCTGCACATA
GTAGGTGCTCAATAAATGTTGTTGACTGACTGAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACACTTAGTGTTTCCCTAAGTATTTTAGCCTCATCTTCAGCACTCTTGTCCCTTCTAAT
AAGTTTTTTTCTCACCTCCACCTGATTGGGTGACTTTTTTTCCCTTTCTGTGCTAATCCT
TGTTCTTAACTATGAAAATCTGGCCTAGAACTCTTCAAGGACTATTCCTTGATTATCAGA
TTCTGCCTGATTCTATTCTCTCTTAAGCTTTTGTTCTTTCAGCACTTATGTACTCAGTTT
GTATTATATCGGTTTGCACTTGTTAATTGTGTTGCTCTGTAAAAGCGTTCCTCAGTTATC
TCATGTGTATGTATTCTGTCTCTTGAACTAGATTGTAAGCTCCTTGAGAGCAGGGACCAT
GTCTTTTACTTTATTTTTTTGTATTCCCCGGACAGTGCCCAGTACAGTGCTCTGCACATA
GTAGGTGCTCAATAAATGTTGTTGACTGACTGAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               110-229, - strand, RNAz p=0.888791

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               110-229, - strand, RNAz p=0.888791

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-453, gnl|bosTau2|chr1 (1305141-1305598)
               

               
               1-453, gnl|Hg17|chr21 (33852779-33853235)
               

               
               1-453, gnl|Mm7|chr16 (91713859-91714382)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-453, gnl|bosTau2|chr1 (1305141-1305598)
               

               
               1-453, gnl|Hg17|chr21 (33852779-33853235)
               

               
               1-453, gnl|Mm7|chr16 (91713859-91714382)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               gul (0.177588)
               

               
               jej (0.0989218)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)
               

               
               jej (0.0989218)

	1-453, gnl\|bosTau2\|chr1 (1305141-1305598)
	1-453, gnl\|Hg17\|chr21 (33852779-33853235)
	1-453, gnl\|Mm7\|chr16 (91713859-91714382)