Non-Coding RNA Search

Ss1.1-rjej12b_k9.5

Sequence:


               
               ACGGCAAGGCCTTGTATTCTATTTTCCCATCTTAAGCGTCATAACATTTTGTGAATAAGA
CAAGTGTTACTTAAAATTCTAGTTGTCGTTCCAGCAATTGAGGCTTTCATAGTTCATGTT
TGAAATATTCACCAGGGAGCCTCAACAAATATATAAAGATTCATTGCTTACTCCGTAAGC
CTCTTCTGGCTATAACCTCTAGGATACTTCTACCACTGTATTTTACCTCTTAGCCATCAG
CGAGCATAGGATCTCATCAGGGCAAGGTAGGGACCTAAATGAATCGATCTAAATGTAAAA
GCCAGTGAAAAATGCATGTTTTTTTTTTTTTTTCCTGTCTATGAACATGTATACCTTTAT
GAATAGAGATCAGTAGTCACCTCTGGCGGTTATAAGACAGAGGATTAAGTAGCAGAAAAT
GTAAAAATCACATGTATGCATTTGGTTTAGGAATGTGCTTTTGTACTTCCACTTGAATAA
AGGTGTGTTTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGGCAAGGCCTTGTATTCTATTTTCCCATCTTAAGCGTCATAACATTTTGTGAATAAGA
CAAGTGTTACTTAAAATTCTAGTTGTCGTTCCAGCAATTGAGGCTTTCATAGTTCATGTT
TGAAATATTCACCAGGGAGCCTCAACAAATATATAAAGATTCATTGCTTACTCCGTAAGC
CTCTTCTGGCTATAACCTCTAGGATACTTCTACCACTGTATTTTACCTCTTAGCCATCAG
CGAGCATAGGATCTCATCAGGGCAAGGTAGGGACCTAAATGAATCGATCTAAATGTAAAA
GCCAGTGAAAAATGCATGTTTTTTTTTTTTTTTCCTGTCTATGAACATGTATACCTTTAT
GAATAGAGATCAGTAGTCACCTCTGGCGGTTATAAGACAGAGGATTAAGTAGCAGAAAAT
GTAAAAATCACATGTATGCATTTGGTTTAGGAATGTGCTTTTGTACTTCCACTTGAATAA
AGGTGTGTTTGA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               5-492, gnl|bosTau2|chr25 (34435651-34436144)
               

               
               5-492, gnl|Hg17|chr7 (98818220-98818716)
               

               
               5-492, gnl|Mm7|chr5 (144275466-144275938)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-492, gnl|bosTau2|chr25 (34435651-34436144)
               

               
               5-492, gnl|Hg17|chr7 (98818220-98818716)
               

               
               5-492, gnl|Mm7|chr5 (144275466-144275938)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               fhi (0.169578)
               

               
               pty (0.142714)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               jej (0.0989218)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               pty (0.142714)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               jej (0.0989218)

	5-492, gnl\|bosTau2\|chr25 (34435651-34436144)
	5-492, gnl\|Hg17\|chr7 (98818220-98818716)
	5-492, gnl\|Mm7\|chr5 (144275466-144275938)

	fhi (0.169578)
	pty (0.142714)
	ssp (0.13552)
	pla (0.133672)
	ova (0.129132)
	jej (0.0989218)