Non-Coding RNA Search

Ss1.1-rjej15b_a4.5.5

Sequence:


               
               GTTGAAGATTGCCATCTCAGAGGCCGAGCAGTCCAGGGTCGCCGAGGGCACTGCAGCTGT
CAGTCCCCGGCCCCCGATCCACCAGTGGCGGGCCCAAGACCAGAATCCCCCGGCACCTCT
CCCCAGGCCCTCTCTGGGCCGAAGCCACTCCTGCCCTGATCTGGGGCCCCCTGGCCGAGA
CACCTGCAGCTGGCCCCCTGCGCTACCCCACCCAAGCCGGCCACGGCCTCGGCGGCACAC
CGTGGGTGGCGGAGAGATGGCCCGAGCCCGGCCACCCCCTCGGCCCTGTCTCCGGAAGGA
GGTCTTCCCTCTTGGAGGAGTGGGAGGCGCTCCTCCCCTCGTCACATCTTGCTCGTCTAC
TGCGTCCACGTCTGCCTTCTCTGAAGCTTCAGAACCCAGGTTGAGCTCAACCAAGAGGAA
GGAGCCAAGGGCTTCAGAAGACCAGGTGCTTTCAGACCCCGAGTCCAAGACCATGGGAAA
GGTTTCTCGATTCAGAATACGCAGGACACCGGCCCGTTCTCAGTTAAACCTTACGCCCAT
GGGGCTGCCTCGACCAATCAGGTTGAACAAGAAGGAGTTCAGCCTGGAAGAAATTTACAC
CAATAAGAATTACCAGTCACCCACGACCAGGAGGACCTTTGAGACCATCTTCGAGGAACC
CCGGGAGCGCAACGGGACCCTGATTTTCACCAGCTCAAAGAAGCTCCGGCGGACTGTAGA
ATTTCGGGACTGCAGCCTTCCTCGATCCAGGCGGCCATCTCGAGGGGCCCGGGCTGCAGC
TGGCAGGACCGTTACTCCCAATCTGGCCCCCAACCCAGATGTGGGGCCCCTGCTGCAGCA
GCGACTGCAGGAGCTGGATGCCTTGCTCCTCGAAGAGGAGGAAGGGGATCAAGAGCAGCC
CCATCGGACTTAGAAGCGCCATCTGTTTGTCCGTTCATCCTGGAGGGAGGGGAAGTCTCT
AAGGCAGTTATATTTTTTCTCTACATTTCTAGTAAAGTTTTCGATATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGAAGATTGCCATCTCAGAGGCCGAGCAGTCCAGGGTCGCCGAGGGCACTGCAGCTGT
CAGTCCCCGGCCCCCGATCCACCAGTGGCGGGCCCAAGACCAGAATCCCCCGGCACCTCT
CCCCAGGCCCTCTCTGGGCCGAAGCCACTCCTGCCCTGATCTGGGGCCCCCTGGCCGAGA
CACCTGCAGCTGGCCCCCTGCGCTACCCCACCCAAGCCGGCCACGGCCTCGGCGGCACAC
CGTGGGTGGCGGAGAGATGGCCCGAGCCCGGCCACCCCCTCGGCCCTGTCTCCGGAAGGA
GGTCTTCCCTCTTGGAGGAGTGGGAGGCGCTCCTCCCCTCGTCACATCTTGCTCGTCTAC
TGCGTCCACGTCTGCCTTCTCTGAAGCTTCAGAACCCAGGTTGAGCTCAACCAAGAGGAA
GGAGCCAAGGGCTTCAGAAGACCAGGTGCTTTCAGACCCCGAGTCCAAGACCATGGGAAA
GGTTTCTCGATTCAGAATACGCAGGACACCGGCCCGTTCTCAGTTAAACCTTACGCCCAT
GGGGCTGCCTCGACCAATCAGGTTGAACAAGAAGGAGTTCAGCCTGGAAGAAATTTACAC
CAATAAGAATTACCAGTCACCCACGACCAGGAGGACCTTTGAGACCATCTTCGAGGAACC
CCGGGAGCGCAACGGGACCCTGATTTTCACCAGCTCAAAGAAGCTCCGGCGGACTGTAGA
ATTTCGGGACTGCAGCCTTCCTCGATCCAGGCGGCCATCTCGAGGGGCCCGGGCTGCAGC
TGGCAGGACCGTTACTCCCAATCTGGCCCCCAACCCAGATGTGGGGCCCCTGCTGCAGCA
GCGACTGCAGGAGCTGGATGCCTTGCTCCTCGAAGAGGAGGAAGGGGATCAAGAGCAGCC
CCATCGGACTTAGAAGCGCCATCTGTTTGTCCGTTCATCCTGGAGGGAGGGGAAGTCTCT
AAGGCAGTTATATTTTTTCTCTACATTTCTAGTAAAGTTTTCGATATG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q922N8_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q922N8_MOUSE

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-359, - strand, RNAz p=0.646209
               

               
               791-907, - strand, RNAz p=0.515853

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-359, - strand, RNAz p=0.646209
               

               
               791-907, - strand, RNAz p=0.515853

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               59-175, + strand, RNAmicro p=0.951482

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               59-175, + strand, RNAmicro p=0.951482

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-408, gnl|bosTau2|chr25 (25777194-25776787)
               

               
               1-408, gnl|Hg17|chr16 (30573641-30574045)
               

               
               1-408, gnl|Mm7|chr7 (123571794-123572192)
               


               
               632-1008, gnl|bosTau2|chr25 (25775994-25775611)
               

               
               632-1008, gnl|Hg17|chr16 (30574852-30575228)
               

               
               632-1008, gnl|Mm7|chr7 (123572940-123573318)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-408, gnl|bosTau2|chr25 (25777194-25776787)
               

               
               1-408, gnl|Hg17|chr16 (30573641-30574045)
               

               
               1-408, gnl|Mm7|chr7 (123571794-123572192)
               


               
               632-1008, gnl|bosTau2|chr25 (25775994-25775611)
               

               
               632-1008, gnl|Hg17|chr16 (30574852-30575228)
               

               
               632-1008, gnl|Mm7|chr7 (123572940-123573318)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               nep (0.183925)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               cje (0.165235)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 8 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               cje (0.165235)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	40-359, - strand, RNAz p=0.646209
	791-907, - strand, RNAz p=0.515853

	1-408, gnl\|bosTau2\|chr25 (25777194-25776787)
	1-408, gnl\|Hg17\|chr16 (30573641-30574045)
	1-408, gnl\|Mm7\|chr7 (123571794-123572192)

	632-1008, gnl\|bosTau2\|chr25 (25775994-25775611)
	632-1008, gnl\|Hg17\|chr16 (30574852-30575228)
	632-1008, gnl\|Mm7\|chr7 (123572940-123573318)

	nep (0.183925)
	fty (0.17584)
	ill (0.175593)
	cje (0.165235)
	med (0.116252)
	jca (0.11396)
	jej (0.0989218)
	eje (0.0988338)