Non-Coding RNA Search

Ss1.1-rjej15b_a5.5

Sequence:


               
               TTTCAGGGCACGAAAGGTGATCCCCAGAACTCAAATGGGGGCATTTACCTGGATGATGTC
ACTTTGACGGAAACCCCATGCCCCACGGGTGTTTGGACAGTCCGGAATTTCTCCCAGGTC
CTGCAGGACACCGTTCAGGGGGACAAGCTCCAGAGCCCTCGATTCTATAGCTCAGAGGGC
TACGGCTTGGGGCTGACCTTATACCCTCATGGTGGCATGAACTCCGAGCACTCTGAGTAC
GTGGGACTTGCCTTTCACCTGTGCAGTGGAGAGAATGACGCGGTCCTGGAGTGGCCCGTG
GAAAACAGGCAGGTGATCATGACGATACTGGACCAGGAACCGGATGTCAGGAAGAGAATG
TCCTCAAGCATGGTGTTCACTACCTCCAAGTCCCAGACCTCAGCGGCAATAAACGGCTCA
GTCATTTGGGACCGGCCGTCCTTCGTGGGATCCTATCATAACAGCTGTGATTGTTTTAGA
ACCATCGACTGGGGCTGGAGTGGTGTCATCTCTCACCAGATGCTGAAAAGGAAGAGTTTC
CTTAAAAACAATGACCTTATCCTGTTTGTGGACTTTGAAGATATCACCCATCTTAACCAG
ACTGAAGTTGACGTTAAAGACAGCAGGCTGACCCCCCGCGGCCTTATTCTCCAAGGCCAG
GAGCAGCAGGTCTCTGAAGAAGCTTCCAGAAAGGCCTCCTTAGAGAAAGCCCTCCTGGAG
AGCCCGGCCCAGGGGCATTCCGGACGACAGAAGCGGTCGGTGGACAACACAGGCCCCCTG
GAGGACCCCACCTGGCCGCAGTACTTCAGAGACCCCTGTGACCCGAACCCTTGCCAAAAT
GAAGGCATCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCAGGGCACGAAAGGTGATCCCCAGAACTCAAATGGGGGCATTTACCTGGATGATGTC
ACTTTGACGGAAACCCCATGCCCCACGGGTGTTTGGACAGTCCGGAATTTCTCCCAGGTC
CTGCAGGACACCGTTCAGGGGGACAAGCTCCAGAGCCCTCGATTCTATAGCTCAGAGGGC
TACGGCTTGGGGCTGACCTTATACCCTCATGGTGGCATGAACTCCGAGCACTCTGAGTAC
GTGGGACTTGCCTTTCACCTGTGCAGTGGAGAGAATGACGCGGTCCTGGAGTGGCCCGTG
GAAAACAGGCAGGTGATCATGACGATACTGGACCAGGAACCGGATGTCAGGAAGAGAATG
TCCTCAAGCATGGTGTTCACTACCTCCAAGTCCCAGACCTCAGCGGCAATAAACGGCTCA
GTCATTTGGGACCGGCCGTCCTTCGTGGGATCCTATCATAACAGCTGTGATTGTTTTAGA
ACCATCGACTGGGGCTGGAGTGGTGTCATCTCTCACCAGATGCTGAAAAGGAAGAGTTTC
CTTAAAAACAATGACCTTATCCTGTTTGTGGACTTTGAAGATATCACCCATCTTAACCAG
ACTGAAGTTGACGTTAAAGACAGCAGGCTGACCCCCCGCGGCCTTATTCTCCAAGGCCAG
GAGCAGCAGGTCTCTGAAGAAGCTTCCAGAAAGGCCTCCTTAGAGAAAGCCCTCCTGGAG
AGCCCGGCCCAGGGGCATTCCGGACGACAGAAGCGGTCGGTGGACAACACAGGCCCCCTG
GAGGACCCCACCTGGCCGCAGTACTTCAGAGACCCCTGTGACCCGAACCCTTGCCAAAAT
GAAGGCATCTGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q29232_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q29232_PIG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-119, + strand, RNAz p=0.614429
               

               
               609-728, - strand, RNAz p=0.979716

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, + strand, RNAz p=0.614429
               

               
               609-728, - strand, RNAz p=0.979716

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-401, gnl|bosTau2|chr23 (18823998-18823598)
               

               
               1-401, gnl|Hg17|chr6 (46908838-46909229)
               

               
               1-401, gnl|Mm7|chr17 (41600922-41600525)
               


               
               552-807, gnl|bosTau2|chr23 (18821069-18820812)
               

               
               552-807, gnl|Hg17|chr6 (46910896-46911171)
               

               
               552-807, gnl|Mm7|chr17 (41598804-41598527)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-401, gnl|bosTau2|chr23 (18823998-18823598)
               

               
               1-401, gnl|Hg17|chr6 (46908838-46909229)
               

               
               1-401, gnl|Mm7|chr17 (41600922-41600525)
               


               
               552-807, gnl|bosTau2|chr23 (18821069-18820812)
               

               
               552-807, gnl|Hg17|chr6 (46910896-46911171)
               

               
               552-807, gnl|Mm7|chr17 (41598804-41598527)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jej (0.296765)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.296765)

	1-119, + strand, RNAz p=0.614429
	609-728, - strand, RNAz p=0.979716

	1-401, gnl\|bosTau2\|chr23 (18823998-18823598)
	1-401, gnl\|Hg17\|chr6 (46908838-46909229)
	1-401, gnl\|Mm7\|chr17 (41600922-41600525)

	552-807, gnl\|bosTau2\|chr23 (18821069-18820812)
	552-807, gnl\|Hg17\|chr6 (46910896-46911171)
	552-807, gnl\|Mm7\|chr17 (41598804-41598527)