Non-Coding RNA Search

Ss1.1-rjej15b_f2.5

Sequence:


               
               CCACTTCATCCTTTTTTCTTCCCCTGGAACTCTGGGTGGAACTTCAGTTATGGAAAGGAC
TGGAAAAAAAAAAAATCAAATCCGCCTCCTCATGTGGCAGGTGGGGAAACGGAGGCCTAG
AGAAGGACACATGCTCATCTGAGGTCCCGTGGTGGCAGAGGCATGACTGGACCCAGTGCC
CCGCCTCCAGCAGGGCCCCTTTGCTCTCTGCTCTAGCTCATGCCCTCCTGCTTCTCTTTC
TAGGCGCCCCCCTTGCTTCCAGGATCCGCATCCTGCCGTAGGTGCCCTGTCCCTGCCAGC
CCCAGGAGGACAGGCCAGGGCTGCGGAGTGGGACTCGGGGCCCAGTAGCCAGCTCTGTGG
CACAGGCTACGTCAAGTCACTTTACCTCAGAGCCTCTGGAAGCTTTAGGTATGCCAGTCC
CAGCCCTGCCAGTTTCCCACTGGGGTGGGGTCCCCCAGCACCAAGAACGCAAATGCACCC
ATTGGCCCCTGAGGTACCGCCTCCAGGCAGTCCCCCAAGGAGCAGACGCAGCCCTGGAGC
CCCGCCAGGCCCTGAGCTCCGAGGGGCTTGCTGGATTCACCCCCCCACCCCTGCCCTGGC
CGGATCCCCAGCAGCCCATCTCATCCTACTGAGAAAACAGCGGAGGAAGCAGGGTAGCCT
CCCGCTCCATGTTTTTGCTCCGCCACCAGCGGGCATCTCAGCTTCTCAGCCCTGGGCTCT
TTCCTTAGTATGGGTTTTATAAAAGTTGTTGCCTTTTATAATGGACTGTCACTTTCAGCC
ACCCCACCCCCGTCCAGGCCCCTGCTGGCAGGGAATGGAAACGTGTCATTTGTAAAAGAT
GAAAAGCATTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACTTCATCCTTTTTTCTTCCCCTGGAACTCTGGGTGGAACTTCAGTTATGGAAAGGAC
TGGAAAAAAAAAAAATCAAATCCGCCTCCTCATGTGGCAGGTGGGGAAACGGAGGCCTAG
AGAAGGACACATGCTCATCTGAGGTCCCGTGGTGGCAGAGGCATGACTGGACCCAGTGCC
CCGCCTCCAGCAGGGCCCCTTTGCTCTCTGCTCTAGCTCATGCCCTCCTGCTTCTCTTTC
TAGGCGCCCCCCTTGCTTCCAGGATCCGCATCCTGCCGTAGGTGCCCTGTCCCTGCCAGC
CCCAGGAGGACAGGCCAGGGCTGCGGAGTGGGACTCGGGGCCCAGTAGCCAGCTCTGTGG
CACAGGCTACGTCAAGTCACTTTACCTCAGAGCCTCTGGAAGCTTTAGGTATGCCAGTCC
CAGCCCTGCCAGTTTCCCACTGGGGTGGGGTCCCCCAGCACCAAGAACGCAAATGCACCC
ATTGGCCCCTGAGGTACCGCCTCCAGGCAGTCCCCCAAGGAGCAGACGCAGCCCTGGAGC
CCCGCCAGGCCCTGAGCTCCGAGGGGCTTGCTGGATTCACCCCCCCACCCCTGCCCTGGC
CGGATCCCCAGCAGCCCATCTCATCCTACTGAGAAAACAGCGGAGGAAGCAGGGTAGCCT
CCCGCTCCATGTTTTTGCTCCGCCACCAGCGGGCATCTCAGCTTCTCAGCCCTGGGCTCT
TTCCTTAGTATGGGTTTTATAAAAGTTGTTGCCTTTTATAATGGACTGTCACTTTCAGCC
ACCCCACCCCCGTCCAGGCCCCTGCTGGCAGGGAATGGAAACGTGTCATTTGTAAAAGAT
GAAAAGCATTGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               386-502, - strand, RNAz p=0.881092

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               386-502, - strand, RNAz p=0.881092

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-852, gnl|bosTau2|chr13 (22409996-22409180)
               

               
               3-852, gnl|Hg17|chr11 (76185841-76186644)
               

               
               3-852, gnl|Mm7|chr7 (94383519-94382783)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-852, gnl|bosTau2|chr13 (22409996-22409180)
               

               
               3-852, gnl|Hg17|chr11 (76185841-76186644)
               

               
               3-852, gnl|Mm7|chr7 (94383519-94382783)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               cli (0.458435)
               

               
               cov (0.396458)
               

               
               mas (0.210305)
               

               
               fhi (0.169578)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.458435)
               

               
               cov (0.396458)
               

               
               mas (0.210305)
               

               
               fhi (0.169578)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)

	3-852, gnl\|bosTau2\|chr13 (22409996-22409180)
	3-852, gnl\|Hg17\|chr11 (76185841-76186644)
	3-852, gnl\|Mm7\|chr7 (94383519-94382783)

	cli (0.458435)
	cov (0.396458)
	mas (0.210305)
	fhi (0.169578)
	ebs (0.118301)
	jej (0.0989218)