Non-Coding RNA Search

Ss1.1-rjej15b_n22.5

Sequence:


               
               TGGTTCTCTCTACACTGGCTAAGAATATTGCTCTACACTGTAAGTTTTAAACGTCCTGTT
TCTGTATGAATGTAGTGTGGGTTTGAGTAGCATTGTGTGTGAGCAGCCCCACAGGTGCAT
TCACCCTCTAGTCACCTTTCGCTGCCCCTCAGTTTAATGAAGAAAAAACAAAAAACACAA
AGCCTTAAGCTCTTTGAATTCTTCCTTTACCAAATGAGCATGGTTCTAACAGCCGGAGAT
GGGCCTCTATTGGAAACAGCCCCTCCAGCCTTTGCCTGTTCTTCACCTGCTCCATGCTCA
GCGTGTCTCGTTCCCAGGTGACAATTAGTTGGCTAGAAATTTAAAACTTTTCTGTAACTT
TAGATTATGTTTTGTGGTAATGTTTTGCACCCTTCTGTTAAAGATGCATAGTTGGGCTTT
TTTTTTTTTTTTTTTTTTTTAATATAAACCAAATAAGCCCTACCCTTTCCTCTTGTCTCT
GAGGAATGTGAGCTCATGTACTTATTTAAGGTTTTGGGTTCTGTTTACTATCCACTGTTC
TTTAGCCAGAAATTCTCTAGTGATCTGAAGCAATGTCACTGAAGACCAGTTTTTAAATTA
TGTGTTGGCAAGTTGCCTTATATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGTTCTCTCTACACTGGCTAAGAATATTGCTCTACACTGTAAGTTTTAAACGTCCTGTT
TCTGTATGAATGTAGTGTGGGTTTGAGTAGCATTGTGTGTGAGCAGCCCCACAGGTGCAT
TCACCCTCTAGTCACCTTTCGCTGCCCCTCAGTTTAATGAAGAAAAAACAAAAAACACAA
AGCCTTAAGCTCTTTGAATTCTTCCTTTACCAAATGAGCATGGTTCTAACAGCCGGAGAT
GGGCCTCTATTGGAAACAGCCCCTCCAGCCTTTGCCTGTTCTTCACCTGCTCCATGCTCA
GCGTGTCTCGTTCCCAGGTGACAATTAGTTGGCTAGAAATTTAAAACTTTTCTGTAACTT
TAGATTATGTTTTGTGGTAATGTTTTGCACCCTTCTGTTAAAGATGCATAGTTGGGCTTT
TTTTTTTTTTTTTTTTTTTTAATATAAACCAAATAAGCCCTACCCTTTCCTCTTGTCTCT
GAGGAATGTGAGCTCATGTACTTATTTAAGGTTTTGGGTTCTGTTTACTATCCACTGTTC
TTTAGCCAGAAATTCTCTAGTGATCTGAAGCAATGTCACTGAAGACCAGTTTTTAAATTA
TGTGTTGGCAAGTTGCCTTATATT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               165-309, - strand, RNAz p=0.989375
               

               
               350-504, + strand, RNAz p=0.989721

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               165-309, - strand, RNAz p=0.989375
               

               
               350-504, + strand, RNAz p=0.989721

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               7-624, gnl|bosTau2|chr19 (13713754-13713152)
               

               
               7-624, gnl|Hg17|chr17 (24108509-24107897)
               

               
               7-624, gnl|Mm7|chr11 (78237672-78238255)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-624, gnl|bosTau2|chr19 (13713754-13713152)
               

               
               7-624, gnl|Hg17|chr17 (24108509-24107897)
               

               
               7-624, gnl|Mm7|chr11 (78237672-78238255)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cje (0.165235)
               

               
               sug (0.127291)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.165235)
               

               
               sug (0.127291)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

	165-309, - strand, RNAz p=0.989375
	350-504, + strand, RNAz p=0.989721

	7-624, gnl\|bosTau2\|chr19 (13713754-13713152)
	7-624, gnl\|Hg17\|chr17 (24108509-24107897)
	7-624, gnl\|Mm7\|chr11 (78237672-78238255)