Non-Coding RNA Search

Ss1.1-rjej16b_b9.5

Sequence:


               
               CCGGAAACAGCGGGAGGAGGCTGCCAGGAAGAAGGAAGAAGAGAGGAAAGCAAAAGATGA
TGCAACCTTGTCAGGAAAACGAATGCAGTCGCTCTCCCTGAATAAGTAGCCGCCTGTGGG
AGGAGATACCAGGGAACCGGGCTGCGCTGCCAGGACCTCTGCCGTGTCTCGCCCACCCTG
TGCCCCGGCGCCACTGCAGCAGCCCCTCATGGCGAGGAGCCCCCCCACTGCCTGGGACCT
CCTCTTCATCTTGGCACAGAAATCGTTTGGGGGGATGGTGGGTGGGGGGGCTGGGGGGGG
CAGCTGCTATCTTTGAGACAGAAAGATGCAGGACAGCATTTCATATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGAAACAGCGGGAGGAGGCTGCCAGGAAGAAGGAAGAAGAGAGGAAAGCAAAAGATGA
TGCAACCTTGTCAGGAAAACGAATGCAGTCGCTCTCCCTGAATAAGTAGCCGCCTGTGGG
AGGAGATACCAGGGAACCGGGCTGCGCTGCCAGGACCTCTGCCGTGTCTCGCCCACCCTG
TGCCCCGGCGCCACTGCAGCAGCCCCTCATGGCGAGGAGCCCCCCCACTGCCTGGGACCT
CCTCTTCATCTTGGCACAGAAATCGTTTGGGGGGATGGTGGGTGGGGGGGCTGGGGGGGG
CAGCTGCTATCTTTGAGACAGAAAGATGCAGGACAGCATTTCATATGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               241-348, - strand, RNAz p=0.788095

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               241-348, - strand, RNAz p=0.788095

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               49-348, gnl|bosTau2|chr25 (34915688-34915390)
               

               
               49-348, gnl|canFam2|chr6 (13199869-13199417)
               

               
               49-348, gnl|dasNov1|scaffold_222766 (4344-3887)
               

               
               49-348, gnl|echTel1|scaffold_293702 (28248-27813)
               

               
               49-348, gnl|hg17|chr2 (167571077-167571535)
               

               
               49-348, gnl|Hg17|chr7 (98639016-98638717)
               

               
               49-348, gnl|loxAfr1|scaffold_10865 (33422-32954)
               

               
               49-348, gnl|mm7|chr5 (144158527-144158978)
               

               
               49-348, gnl|Mm7|chr5 (144159017-144158723)
               

               
               49-348, gnl|monDom2|scaffold_17 (6752197-6752667)
               

               
               49-348, gnl|oryCun1|scaffold_183398 (21942-21534)
               

               
               49-348, gnl|panTro1|chr13 (56973897-56974355)
               

               
               49-348, gnl|rheMac2|chr12 (30545282-30545742)
               

               
               49-348, gnl|rn3|chr12 (9824693-9824232)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               49-348, gnl|bosTau2|chr25 (34915688-34915390)
               

               
               49-348, gnl|canFam2|chr6 (13199869-13199417)
               

               
               49-348, gnl|dasNov1|scaffold_222766 (4344-3887)
               

               
               49-348, gnl|echTel1|scaffold_293702 (28248-27813)
               

               
               49-348, gnl|hg17|chr2 (167571077-167571535)
               

               
               49-348, gnl|Hg17|chr7 (98639016-98638717)
               

               
               49-348, gnl|loxAfr1|scaffold_10865 (33422-32954)
               

               
               49-348, gnl|mm7|chr5 (144158527-144158978)
               

               
               49-348, gnl|Mm7|chr5 (144159017-144158723)
               

               
               49-348, gnl|monDom2|scaffold_17 (6752197-6752667)
               

               
               49-348, gnl|oryCun1|scaffold_183398 (21942-21534)
               

               
               49-348, gnl|panTro1|chr13 (56973897-56974355)
               

               
               49-348, gnl|rheMac2|chr12 (30545282-30545742)
               

               
               49-348, gnl|rn3|chr12 (9824693-9824232)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               cag (0.302389)
               

               
               jej (0.0989218)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.302389)
               

               
               jej (0.0989218)

	49-348, gnl\|bosTau2\|chr25 (34915688-34915390)
	49-348, gnl\|canFam2\|chr6 (13199869-13199417)
	49-348, gnl\|dasNov1\|scaffold_222766 (4344-3887)
	49-348, gnl\|echTel1\|scaffold_293702 (28248-27813)
	49-348, gnl\|hg17\|chr2 (167571077-167571535)
	49-348, gnl\|Hg17\|chr7 (98639016-98638717)
	49-348, gnl\|loxAfr1\|scaffold_10865 (33422-32954)
	49-348, gnl\|mm7\|chr5 (144158527-144158978)
	49-348, gnl\|Mm7\|chr5 (144159017-144158723)
	49-348, gnl\|monDom2\|scaffold_17 (6752197-6752667)
	49-348, gnl\|oryCun1\|scaffold_183398 (21942-21534)
	49-348, gnl\|panTro1\|chr13 (56973897-56974355)
	49-348, gnl\|rheMac2\|chr12 (30545282-30545742)
	49-348, gnl\|rn3\|chr12 (9824693-9824232)