Ss1.1-rjej16b_e17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGAAGAAGAGCTCGCACCCAACAGTGGCGAGGGTCTCTACCACCTGACGATGGAGTTCG CCGGTTGGCTGAATGGCTCGCTCGTGGGGTTTTATAGAACAACATACGTGGAGAAAGGAC AAATCAAGAGCATAGCAGCCACTGATCATGAACCAACAGATGCCAGAAAATCCTTCCCTT GTTTTGATGAGCCCAACAAAAAGGCAACTTATACAATATCTATCATCCATCCCAAAGAAT ATAAGGCACTTTCAAATATGCCAGTGGAGAAAGAAGAGTCTGTGGATGATATATGGACTC AAACAACTTTCCAGAAGTCTGTTCCTATGAGCACTTACCTGGTATGCTTTGCTGTACATC AATTTGACTCTGTAACAAGAACGTCAAGGAGCGGAAAACCTCTCACTATATATGTCCAGC CAGAACAAAAGCATACAGCTGAGTATGCTGCAAACATAACCAAAAGTGTGTTTGATTACT TTGAAGACTACTTTGCTATGGAATATTCTCTTCCTAAATTAGATAAAATCGCTATTCCAG ATTTTGGCACTGGGGCTATGGAGAACTGGGGACTCATCACTTACAGAGAAACGAACCTGC TTTATGACCCTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGAAGAAGAGCTCGCACCCAACAGTGGCGAGGGTCTCTACCACCTGACGATGGAGTTCG CCGGTTGGCTGAATGGCTCGCTCGTGGGGTTTTATAGAACAACATACGTGGAGAAAGGAC AAATCAAGAGCATAGCAGCCACTGATCATGAACCAACAGATGCCAGAAAATCCTTCCCTT GTTTTGATGAGCCCAACAAAAAGGCAACTTATACAATATCTATCATCCATCCCAAAGAAT ATAAGGCACTTTCAAATATGCCAGTGGAGAAAGAAGAGTCTGTGGATGATATATGGACTC AAACAACTTTCCAGAAGTCTGTTCCTATGAGCACTTACCTGGTATGCTTTGCTGTACATC AATTTGACTCTGTAACAAGAACGTCAAGGAGCGGAAAACCTCTCACTATATATGTCCAGC CAGAACAAAAGCATACAGCTGAGTATGCTGCAAACATAACCAAAAGTGTGTTTGATTACT TTGAAGACTACTTTGCTATGGAATATTCTCTTCCTAAATTAGATAAAATCGCTATTCCAG ATTTTGGCACTGGGGCTATGGAGAACTGGGGACTCATCACTTACAGAGAAACGAACCTGC TTTATGACCCTA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 63 entry(ies) | More info |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
| 128-269, gnl|bosTau2|chr6 (7830705-7830564) | |
| 128-269, gnl|canFam2|chr32 (33485172-33485339) | |
| 128-269, gnl|canFam2|chr32 (33485178-33485342) | |
| 128-269, gnl|canFam2|chr32 (33485178-33485342) | |
| 128-269, gnl|danRer3|chr13 (22484764-22484609) | |
| 128-269, gnl|danRer3|chr13 (22484766-22484609) | |
| 128-269, gnl|danRer3|chr13 (22484758-22484609) | |
| 128-269, gnl|echTel1|scaffold_239324 (3740-3572) | |
| 128-269, gnl|echTel1|scaffold_239324 (3734-3570) | |
| 128-269, gnl|echTel1|scaffold_239324 (3734-3570) | |
| 128-269, gnl|fr1|chrUn (288944419-288944583) | |
| 128-269, gnl|fr1|chrUn (288944421-288944585) | |
| 128-269, gnl|fr1|chrUn (288944429-288944585) | |
| 128-269, gnl|galGal2|chr4 (58368542-58368375) | |
| 128-269, gnl|galGal2|chr4 (58368535-58368371) | |
| 128-269, gnl|galGal2|chr4 (58368530-58368371) | |
| 128-269, gnl|hg17|chr11 (50103586-50103750) | |
| 128-269, gnl|hg17|chr4 (111767292-111767456) | |
| 128-269, gnl|Hg17|chr4 (111767301-111767442) | |
| 128-269, gnl|hg17|chr7 (62113737-62113904) | |
| 128-269, gnl|loxAfr1|scaffold_1105 (54744-54576) | |
| 128-269, gnl|loxAfr1|scaffold_1105 (54738-54574) | |
| 128-269, gnl|loxAfr1|scaffold_1105 (54738-54574) | |
| 128-269, gnl|mm7|chr3 (129161238-129161071) | |
| 128-269, gnl|mm7|chr3 (129161232-129161069) | |
| 128-269, gnl|mm7|chr3 (129161232-129161069) | |
| 128-269, gnl|Mm7|chr3 (129161221-129161080) | |
| 128-269, gnl|monDom2|scaffold_9 (84052250-84052087) | |
| 128-269, gnl|monDom2|scaffold_9 (84052246-84052082) | |
| 128-269, gnl|monDom2|scaffold_9 (84052246-84052082) | |
| 128-269, gnl|oryCun1|scaffold_204988 (83931-83749) | |
| 128-269, gnl|oryCun1|scaffold_204988 (83925-83756) | |
| 128-269, gnl|oryCun1|scaffold_204988 (83925-83756) | |
| 128-269, gnl|panTro1|chr3 (128298378-128298542) | |
| 128-269, gnl|panTro1|chr6_random (45158554-45158721) | |
| 128-269, gnl|panTro1|chr9_random (22153914-22154078) | |
| 128-269, gnl|rheMac2|chr5 (103408874-103409042) | |
| 128-269, gnl|rheMac2|chr5 (103408880-103409044) | |
| 128-269, gnl|rheMac2|chr5 (103408880-103409044) | |
| 128-269, gnl|rn3|chr18 (41143665-41143830) | |
| 128-269, gnl|rn3|chr18 (41143665-41143830) | |
| 128-269, gnl|tetNig1|chrUn_random (35521821-35521989) | |
| 128-269, gnl|tetNig1|chrUn_random (35521827-35521989) | |
| 128-269, gnl|tetNig1|chrUn_random (35521835-35521989) | |
| 128-269, gnl|xenTro1|scaffold_720 (506698-506539) | |
| 128-269, gnl|xenTro1|scaffold_720 (506698-506539) | |
| 402-522, gnl|bosTau2|chr6 (7815762-7815642) | |
| 402-522, gnl|canFam2|chr32 (33502946-33503109) | |
| 402-522, gnl|danRer3|chr13 (22479090-22478958) | |
| 402-522, gnl|echTel1|scaffold_278943 (6231-6064) | |
| 402-522, gnl|fr1|chrUn (288945260-288945418) | |
| 402-522, gnl|galGal2|chr4 (58362049-58361898) | |
| 402-522, gnl|hg17|chr4 (111785375-111785540) | |
| 402-522, gnl|Hg17|chr4 (111785397-111785517) | |
| 402-522, gnl|loxAfr1|scaffold_38773 (42252-42089) | |
| 402-522, gnl|mm7|chr3 (129152423-129152253) | |
| 402-522, gnl|Mm7|chr3 (129152401-129152281) | |
| 402-522, gnl|monDom2|scaffold_9 (84034336-84034174) | |
| 402-522, gnl|oryCun1|scaffold_191529 (2777-2941) | |
| 402-522, gnl|panTro1|chr3 (128316463-128316628) | |
| 402-522, gnl|rheMac2|chr5 (103426575-103426741) | |
| 402-522, gnl|rn3|chr1 (56104086-56103928) | |
| 402-522, gnl|xenTro1|scaffold_720 (501664-501498) |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 128-269, gnl|bosTau2|chr6 (7830705-7830564) | |
| 128-269, gnl|canFam2|chr32 (33485172-33485339) | |
| 128-269, gnl|canFam2|chr32 (33485178-33485342) | |
| 128-269, gnl|canFam2|chr32 (33485178-33485342) | |
| 128-269, gnl|danRer3|chr13 (22484764-22484609) | |
| 128-269, gnl|danRer3|chr13 (22484766-22484609) | |
| 128-269, gnl|danRer3|chr13 (22484758-22484609) | |
| 128-269, gnl|echTel1|scaffold_239324 (3740-3572) | |
| 128-269, gnl|echTel1|scaffold_239324 (3734-3570) | |
| 128-269, gnl|echTel1|scaffold_239324 (3734-3570) | |
| 128-269, gnl|fr1|chrUn (288944419-288944583) | |
| 128-269, gnl|fr1|chrUn (288944421-288944585) | |
| 128-269, gnl|fr1|chrUn (288944429-288944585) | |
| 128-269, gnl|galGal2|chr4 (58368542-58368375) | |
| 128-269, gnl|galGal2|chr4 (58368535-58368371) | |
| 128-269, gnl|galGal2|chr4 (58368530-58368371) | |
| 128-269, gnl|hg17|chr11 (50103586-50103750) | |
| 128-269, gnl|hg17|chr4 (111767292-111767456) | |
| 128-269, gnl|Hg17|chr4 (111767301-111767442) | |
| 128-269, gnl|hg17|chr7 (62113737-62113904) | |
| 128-269, gnl|loxAfr1|scaffold_1105 (54744-54576) | |
| 128-269, gnl|loxAfr1|scaffold_1105 (54738-54574) | |
| 128-269, gnl|loxAfr1|scaffold_1105 (54738-54574) | |
| 128-269, gnl|mm7|chr3 (129161238-129161071) | |
| 128-269, gnl|mm7|chr3 (129161232-129161069) | |
| 128-269, gnl|mm7|chr3 (129161232-129161069) | |
| 128-269, gnl|Mm7|chr3 (129161221-129161080) | |
| 128-269, gnl|monDom2|scaffold_9 (84052250-84052087) | |
| 128-269, gnl|monDom2|scaffold_9 (84052246-84052082) | |
| 128-269, gnl|monDom2|scaffold_9 (84052246-84052082) | |
| 128-269, gnl|oryCun1|scaffold_204988 (83931-83749) | |
| 128-269, gnl|oryCun1|scaffold_204988 (83925-83756) | |
| 128-269, gnl|oryCun1|scaffold_204988 (83925-83756) | |
| 128-269, gnl|panTro1|chr3 (128298378-128298542) | |
| 128-269, gnl|panTro1|chr6_random (45158554-45158721) | |
| 128-269, gnl|panTro1|chr9_random (22153914-22154078) | |
| 128-269, gnl|rheMac2|chr5 (103408874-103409042) | |
| 128-269, gnl|rheMac2|chr5 (103408880-103409044) | |
| 128-269, gnl|rheMac2|chr5 (103408880-103409044) | |
| 128-269, gnl|rn3|chr18 (41143665-41143830) | |
| 128-269, gnl|rn3|chr18 (41143665-41143830) | |
| 128-269, gnl|tetNig1|chrUn_random (35521821-35521989) | |
| 128-269, gnl|tetNig1|chrUn_random (35521827-35521989) | |
| 128-269, gnl|tetNig1|chrUn_random (35521835-35521989) | |
| 128-269, gnl|xenTro1|scaffold_720 (506698-506539) | |
| 128-269, gnl|xenTro1|scaffold_720 (506698-506539) | |
| 402-522, gnl|bosTau2|chr6 (7815762-7815642) | |
| 402-522, gnl|canFam2|chr32 (33502946-33503109) | |
| 402-522, gnl|danRer3|chr13 (22479090-22478958) | |
| 402-522, gnl|echTel1|scaffold_278943 (6231-6064) | |
| 402-522, gnl|fr1|chrUn (288945260-288945418) | |
| 402-522, gnl|galGal2|chr4 (58362049-58361898) | |
| 402-522, gnl|hg17|chr4 (111785375-111785540) | |
| 402-522, gnl|Hg17|chr4 (111785397-111785517) | |
| 402-522, gnl|loxAfr1|scaffold_38773 (42252-42089) | |
| 402-522, gnl|mm7|chr3 (129152423-129152253) | |
| 402-522, gnl|Mm7|chr3 (129152401-129152281) | |
| 402-522, gnl|monDom2|scaffold_9 (84034336-84034174) | |
| 402-522, gnl|oryCun1|scaffold_191529 (2777-2941) | |
| 402-522, gnl|panTro1|chr3 (128316463-128316628) | |
| 402-522, gnl|rheMac2|chr5 (103426575-103426741) | |
| 402-522, gnl|rn3|chr1 (56104086-56103928) | |
| 402-522, gnl|xenTro1|scaffold_720 (501664-501498) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jej (0.197844) |