Non-Coding RNA Search

Ss1.1-rjej16b_e9.5.67

Sequence:


               
               CTCAGTCAACATGAAGACTCTCCTCGTTCTTGCGCTTCTCCTCCTTTCTGTCTCTGTACA
GGCCAAGGTCTATGATCGGTGCGAGTTCGCCAGAATTCTGAAAAAGTCTGGAATGGACGG
CTATAGGGGAGTCAGCCTGGCGAACTGGGTATGTTTGGCCAAGTGGGAAAGTAATTTTAA
CACAAAAGCTACAAACTACAATCCTGGAAGCCAAAGCACTGATTATGGAATATTTCAAAT
TAATAGCCGATACTGGTGTAATGACGGCAAGACACCCAAAGCAGTTAATGCCTGTCACAT
ATCCTGCAAAGTTTTGCTGGACGATGACCTCAGTCAAGATATAGAATGTGCAAAGAGGGT
TGTCAGAGATCCACAAGGCATTAAAGCATGGGTGGCATGGAAAGCTCATTGTCAGAACAA
AGATGTCTCGCAGTACATTCGGGGTTGCAAACTGTAACTGTGCAGTTTTCCTTCTTCAGC
TCACCTTGTCTCTTTTTCATATTTAGGAAATAATAGTTGAATGAAAGGTCATACTACCAT
TCTTGCGAACAAATCATGGTTTTACCGAAGCAAGAGCATAAGGTCTTTCTTTAAGAGGCT
TAATGTTTACCTAATGTGTTTATTGTTTGTGTTTATTGTTTTATAGGCCTACAATATTTT
TCAGTTTGCTAAGAGAATTATTGTTGGTCTGAAATCTTAATTATCAAATATACCTCCAGT
ACATTCAGTTCTTAATCAAAGAAATAAACCAGAAACAGTCTTCATCTGTTCAGTTATCTC
TAAAAACAGTAAAAGATAACCAGTCTTTGTTGGGTAATATAAAATTTTAAAAGGAGCAGA
ATGCCAGATGGCTAAAAATGAAGACAACCTGAATTAAGAATTTTGCTTTCATAAAGTGTG
ACCTTTGGCTTAAATGTTTTCTCAGAGATGATTCGTTCATTAAAACGAATTTTAAAATCG
TCTCACAATTTAGGTATCCATCTCTTTTAGCCTTTTAAAAACTCATTTATGCATTTTGCT
GACCATGAAGGAATATAAAGAGGGATTAGATGAGCTGTGCTTTTCCTGAACTTTATCAGC
TGGAATTCATGCATTATGACTAAATTCAGAGGCAGATGAATTCGCAGGCATTGAAATAAT
TGCTAATTAACCACAGGTGTGAATTTATGCATGCTGTAAAAAGTACAAACATTATCATTA
AAAGCTTTGCAATTCAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCAGTCAACATGAAGACTCTCCTCGTTCTTGCGCTTCTCCTCCTTTCTGTCTCTGTACA
GGCCAAGGTCTATGATCGGTGCGAGTTCGCCAGAATTCTGAAAAAGTCTGGAATGGACGG
CTATAGGGGAGTCAGCCTGGCGAACTGGGTATGTTTGGCCAAGTGGGAAAGTAATTTTAA
CACAAAAGCTACAAACTACAATCCTGGAAGCCAAAGCACTGATTATGGAATATTTCAAAT
TAATAGCCGATACTGGTGTAATGACGGCAAGACACCCAAAGCAGTTAATGCCTGTCACAT
ATCCTGCAAAGTTTTGCTGGACGATGACCTCAGTCAAGATATAGAATGTGCAAAGAGGGT
TGTCAGAGATCCACAAGGCATTAAAGCATGGGTGGCATGGAAAGCTCATTGTCAGAACAA
AGATGTCTCGCAGTACATTCGGGGTTGCAAACTGTAACTGTGCAGTTTTCCTTCTTCAGC
TCACCTTGTCTCTTTTTCATATTTAGGAAATAATAGTTGAATGAAAGGTCATACTACCAT
TCTTGCGAACAAATCATGGTTTTACCGAAGCAAGAGCATAAGGTCTTTCTTTAAGAGGCT
TAATGTTTACCTAATGTGTTTATTGTTTGTGTTTATTGTTTTATAGGCCTACAATATTTT
TCAGTTTGCTAAGAGAATTATTGTTGGTCTGAAATCTTAATTATCAAATATACCTCCAGT
ACATTCAGTTCTTAATCAAAGAAATAAACCAGAAACAGTCTTCATCTGTTCAGTTATCTC
TAAAAACAGTAAAAGATAACCAGTCTTTGTTGGGTAATATAAAATTTTAAAAGGAGCAGA
ATGCCAGATGGCTAAAAATGAAGACAACCTGAATTAAGAATTTTGCTTTCATAAAGTGTG
ACCTTTGGCTTAAATGTTTTCTCAGAGATGATTCGTTCATTAAAACGAATTTTAAAATCG
TCTCACAATTTAGGTATCCATCTCTTTTAGCCTTTTAAAAACTCATTTATGCATTTTGCT
GACCATGAAGGAATATAAAGAGGGATTAGATGAGCTGTGCTTTTCCTGAACTTTATCAGC
TGGAATTCATGCATTATGACTAAATTCAGAGGCAGATGAATTCGCAGGCATTGAAATAAT
TGCTAATTAACCACAGGTGTGAATTTATGCATGCTGTAAAAAGTACAAACATTATCATTA
AAAGCTTTGCAATTCAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               LYSC3_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               LYSC3_PIG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               754-873, + strand, RNAz p=0.600034

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               754-873, + strand, RNAz p=0.600034

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               147-307, gnl|bosTau2|chr5 (29034246-29034086)
               

               
               147-307, gnl|Hg17|chr12 (68030155-68030315)
               

               
               147-307, gnl|Mm7|chr10 (116745666-116745506)
               


               
               390-740, gnl|bosTau2|chr5 (29028699-29028356)
               

               
               390-740, gnl|Hg17|chr12 (68033199-68033546)
               

               
               390-740, gnl|Mm7|chr10 (116742367-116741945)
               


               
               754-1224, gnl|bosTau2|chr24 (27056409-27055948)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               147-307, gnl|bosTau2|chr5 (29034246-29034086)
               

               
               147-307, gnl|Hg17|chr12 (68030155-68030315)
               

               
               147-307, gnl|Mm7|chr10 (116745666-116745506)
               


               
               390-740, gnl|bosTau2|chr5 (29028699-29028356)
               

               
               390-740, gnl|Hg17|chr12 (68033199-68033546)
               

               
               390-740, gnl|Mm7|chr10 (116742367-116741945)
               


               
               754-1224, gnl|bosTau2|chr24 (27056409-27055948)

Expressed library(ies): 21 entry(ies)

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Expressed library(ies): 21 entry(ies)

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               lin (5.2417)
               

               
               csk (3.09641)
               

               
               sin (2.62421)
               

               
               jej (1.08814)
               

               
               sag (0.913576)
               

               
               cbl (0.803582)
               

               
               liv (0.585137)
               

               
               ret (0.514933)
               

               
               pro (0.512033)
               

               
               tra (0.369276)
               

               
               clu (0.358938)
               

               
               mgp (0.230681)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               mga (0.160205)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (5.2417)
               

               
               csk (3.09641)
               

               
               sin (2.62421)
               

               
               jej (1.08814)
               

               
               sag (0.913576)
               

               
               cbl (0.803582)
               

               
               liv (0.585137)
               

               
               ret (0.514933)
               

               
               pro (0.512033)
               

               
               tra (0.369276)
               

               
               clu (0.358938)
               

               
               mgp (0.230681)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               mga (0.160205)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)

	147-307, gnl\|bosTau2\|chr5 (29034246-29034086)
	147-307, gnl\|Hg17\|chr12 (68030155-68030315)
	147-307, gnl\|Mm7\|chr10 (116745666-116745506)

	390-740, gnl\|bosTau2\|chr5 (29028699-29028356)
	390-740, gnl\|Hg17\|chr12 (68033199-68033546)
	390-740, gnl\|Mm7\|chr10 (116742367-116741945)

	754-1224, gnl\|bosTau2\|chr24 (27056409-27055948)

	lin (5.2417)
	csk (3.09641)
	sin (2.62421)
	jej (1.08814)
	sag (0.913576)
	cbl (0.803582)
	liv (0.585137)
	ret (0.514933)
	pro (0.512033)
	tra (0.369276)
	clu (0.358938)
	mgp (0.230681)
	ton (0.1755)
	rec (0.17307)
	cut (0.169924)
	cje (0.165235)
	mga (0.160205)
	lun (0.150489)
	spl (0.143184)
	lyg (0.133103)
	ova (0.129132)