Non-Coding RNA Search

Ss1.1-rjej16b_m20.5

Sequence:


               
               ATACTATTTGTGTTTACCTGCGTTGGGAGATAGGGTCGTTTTTTCGTGAAGGTGTGTGTG
TTTGGCACCAAGACTGTTAAAGGGCCCCATGTTGCTGACTTGAGCATAGACCAGCTAGAT
GTCTTCTGCATGTAAGCCTCTGAACAGAGAGGGGTCTCTTTTTTCACGTATGAAATGCAA
GTTGTTAGTACCTCATGAGCCATAGAAGTTCAGCCATGACCCTTTGTTTGGCAGCACGAA
CAGGTTTGTATGTAAAACTGCAGTGGTGTTTTGTCCTATGATTTTTTTTTCAGCTTTCCT
GCTACCTTAAATATACTTACATCTTGATCAGTTTCTGACTTTTTGTTTGCCTTATTTGGG
TCAAGCCTTTTTATGCTTTGTACCTGGAACACAGATGACTTCAGTCTTTGGGGTGTTTTT
TGTTTTTTTTTTTTTTTCGCAGGGTAAGTGTTAGCACACGCCATCTGTGATATCATACTG
TGGTTTCTGTAATCAGTATCTAAGACTTCTGTCTAAAATTCACACACGTAAGAATTGAAG
CAAGTGGTTACATAATGCAGTTGAAGTTCTCGGTTGTTCAGTGTTTGTTAGTGACCTACT
GTGTGCAAGACCCACGCCCAACAACACCACAGTGGATGTTGACCTGTAAAGTATTCTTTT
GAAACATGGCTGAAACGTAGCCTATTATAAGTTAATTATTATTTTTGCTGTTGTAAATAT
TGATGGTTTACAATGTGCTTCGGTGCATATTCCTTAAAAGTTTAAGCAGTGAGAAATAAG
CCCTCTCTGAATTTAGCGCTCTGTTTCTAAACTAATAATAGAGAATGTTACTTGGGAAAA
GTCTGGAATATGTGGTGCACATAGCTGTGCTTCATGAGTGAGTCTCTTAGTTTTTATAAT
GTACCATGGTTCTCAAAGTTTGTGTTTTTTGGTTAATAAAACATTTGATAATAGATATCC
AAAAAAAAAAAATTTTTCTTCCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATACTATTTGTGTTTACCTGCGTTGGGAGATAGGGTCGTTTTTTCGTGAAGGTGTGTGTG
TTTGGCACCAAGACTGTTAAAGGGCCCCATGTTGCTGACTTGAGCATAGACCAGCTAGAT
GTCTTCTGCATGTAAGCCTCTGAACAGAGAGGGGTCTCTTTTTTCACGTATGAAATGCAA
GTTGTTAGTACCTCATGAGCCATAGAAGTTCAGCCATGACCCTTTGTTTGGCAGCACGAA
CAGGTTTGTATGTAAAACTGCAGTGGTGTTTTGTCCTATGATTTTTTTTTCAGCTTTCCT
GCTACCTTAAATATACTTACATCTTGATCAGTTTCTGACTTTTTGTTTGCCTTATTTGGG
TCAAGCCTTTTTATGCTTTGTACCTGGAACACAGATGACTTCAGTCTTTGGGGTGTTTTT
TGTTTTTTTTTTTTTTTCGCAGGGTAAGTGTTAGCACACGCCATCTGTGATATCATACTG
TGGTTTCTGTAATCAGTATCTAAGACTTCTGTCTAAAATTCACACACGTAAGAATTGAAG
CAAGTGGTTACATAATGCAGTTGAAGTTCTCGGTTGTTCAGTGTTTGTTAGTGACCTACT
GTGTGCAAGACCCACGCCCAACAACACCACAGTGGATGTTGACCTGTAAAGTATTCTTTT
GAAACATGGCTGAAACGTAGCCTATTATAAGTTAATTATTATTTTTGCTGTTGTAAATAT
TGATGGTTTACAATGTGCTTCGGTGCATATTCCTTAAAAGTTTAAGCAGTGAGAAATAAG
CCCTCTCTGAATTTAGCGCTCTGTTTCTAAACTAATAATAGAGAATGTTACTTGGGAAAA
GTCTGGAATATGTGGTGCACATAGCTGTGCTTCATGAGTGAGTCTCTTAGTTTTTATAAT
GTACCATGGTTCTCAAAGTTTGTGTTTTTTGGTTAATAAAACATTTGATAATAGATATCC
AAAAAAAAAAAATTTTTCTTCCTC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               131-421, gnl|bosTau2|chr14 (42877756-42877477)
               

               
               131-421, gnl|Hg17|chr8 (96009787-96009549)
               

               
               131-421, gnl|Mm7|chr4 (11099045-11099341)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               131-421, gnl|bosTau2|chr14 (42877756-42877477)
               

               
               131-421, gnl|Hg17|chr8 (96009787-96009549)
               

               
               131-421, gnl|Mm7|chr4 (11099045-11099341)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

Help | Less info


               
               liv (0.585137)
               

               
               kid (0.389206)
               

               
               thg (0.380373)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               bla (0.124347)
               

               
               jej (0.0989218)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.585137)
               

               
               kid (0.389206)
               

               
               thg (0.380373)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               bla (0.124347)
               

               
               jej (0.0989218)

	131-421, gnl\|bosTau2\|chr14 (42877756-42877477)
	131-421, gnl\|Hg17\|chr8 (96009787-96009549)
	131-421, gnl\|Mm7\|chr4 (11099045-11099341)

	liv (0.585137)
	kid (0.389206)
	thg (0.380373)
	fat (0.147427)
	lin (0.145603)
	spl (0.143184)
	bla (0.124347)
	jej (0.0989218)