Non-Coding RNA Search

Ss1.1-rjej16b_o18.5

Sequence:


               
               CTGGAAAAAAAAAAAAAAAAATGGTTTTCTTTTTTTGTATAAATGGAAACAAAATCCAGG
AGAAGCTGCCCCCCACCCCAAGTTTGACACACTACCTTTGCTTCAGTTTCTTAGTCACTG
TTTTCGTCTTTGGTCCCGGGGACGGCCCAGCAGATTCTCCTGGTTCTAACCCAGGGGGTG
TTTGCATCACCCCCTTTTACTTGTATAAAAAAAATGATGGGTTGAAAATGTACTGAGGAA
AAAAAATGTACTTTTTTATAAATAAAGTCTTTAAAACAACAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGAAAAAAAAAAAAAAAAATGGTTTTCTTTTTTTGTATAAATGGAAACAAAATCCAGG
AGAAGCTGCCCCCCACCCCAAGTTTGACACACTACCTTTGCTTCAGTTTCTTAGTCACTG
TTTTCGTCTTTGGTCCCGGGGACGGCCCAGCAGATTCTCCTGGTTCTAACCCAGGGGGTG
TTTGCATCACCCCCTTTTACTTGTATAAAAAAAATGATGGGTTGAAAATGTACTGAGGAA
AAAAAATGTACTTTTTTATAAATAAAGTCTTTAAAACAACAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               99-245, - strand, RNAz p=0.873713
               

               
               140-240, + strand, RNAz p=0.995561

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               99-245, - strand, RNAz p=0.873713
               

               
               140-240, + strand, RNAz p=0.995561

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

Help | Less info


               
               25-280, gnl|bosTau2|chr15 (15488820-15488554)
               

               
               25-280, gnl|canFam2|chr5 (17299958-17299768)
               

               
               25-280, gnl|echTel1|scaffold_56435 (1127-938)
               

               
               25-280, gnl|hg17|chr11 (119036913-119037099)
               

               
               25-280, gnl|Hg17|chr11 (119037162-119036912)
               

               
               25-280, gnl|loxAfr1|scaffold_72480 (6965-6783)
               

               
               25-280, gnl|mm7|chr9 (43741808-43741614)
               

               
               25-280, gnl|Mm7|chr9 (43741549-43741806)
               

               
               25-280, gnl|monDom2|scaffold_2 (118634150-118633940)
               

               
               25-280, gnl|oryCun1|scaffold_201672 (42218-42031)
               

               
               25-280, gnl|panTro1|chr9 (121054347-121054532)
               

               
               25-280, gnl|rheMac2|chr14 (118069422-118069607)
               

               
               25-280, gnl|rn3|chr8 (46810821-46810627)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-280, gnl|bosTau2|chr15 (15488820-15488554)
               

               
               25-280, gnl|canFam2|chr5 (17299958-17299768)
               

               
               25-280, gnl|echTel1|scaffold_56435 (1127-938)
               

               
               25-280, gnl|hg17|chr11 (119036913-119037099)
               

               
               25-280, gnl|Hg17|chr11 (119037162-119036912)
               

               
               25-280, gnl|loxAfr1|scaffold_72480 (6965-6783)
               

               
               25-280, gnl|mm7|chr9 (43741808-43741614)
               

               
               25-280, gnl|Mm7|chr9 (43741549-43741806)
               

               
               25-280, gnl|monDom2|scaffold_2 (118634150-118633940)
               

               
               25-280, gnl|oryCun1|scaffold_201672 (42218-42031)
               

               
               25-280, gnl|panTro1|chr9 (121054347-121054532)
               

               
               25-280, gnl|rheMac2|chr14 (118069422-118069607)
               

               
               25-280, gnl|rn3|chr8 (46810821-46810627)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               jej (0.197844)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.197844)

	99-245, - strand, RNAz p=0.873713
	140-240, + strand, RNAz p=0.995561

	25-280, gnl\|bosTau2\|chr15 (15488820-15488554)
	25-280, gnl\|canFam2\|chr5 (17299958-17299768)
	25-280, gnl\|echTel1\|scaffold_56435 (1127-938)
	25-280, gnl\|hg17\|chr11 (119036913-119037099)
	25-280, gnl\|Hg17\|chr11 (119037162-119036912)
	25-280, gnl\|loxAfr1\|scaffold_72480 (6965-6783)
	25-280, gnl\|mm7\|chr9 (43741808-43741614)
	25-280, gnl\|Mm7\|chr9 (43741549-43741806)
	25-280, gnl\|monDom2\|scaffold_2 (118634150-118633940)
	25-280, gnl\|oryCun1\|scaffold_201672 (42218-42031)
	25-280, gnl\|panTro1\|chr9 (121054347-121054532)
	25-280, gnl\|rheMac2\|chr14 (118069422-118069607)
	25-280, gnl\|rn3\|chr8 (46810821-46810627)