Non-Coding RNA Search

Ss1.1-rjej18b_a1.5

Sequence:


               
               ACCCTTTGACAAGCTGAGTTGTCCAGTGTAGCCAGTTCGGTTCAACGGCATTGATGTTTC
GTCTTTGTGCCTTTCTTTTTCTTTTTCCCTTCTGCCCTCCCCCTCCTCCCATCCCTTCCC
AGGAATAAAGAGATAAGGCTGGACTTGTCTGTAAGACTGAACTCCCAGGATGAGCACCCA
AAGGTTTTAGGTCGATGTTCCCTGTGGTTTATCCTCTTGGTAATAACAAACAAAAATGCC
GGTTGTCTGTGTTCTTTTATCACTATTCCTAACATTTGTACATGATAGCTTTGATTCTGC
AAGTAAAAGTAAATCATGTGTTGTGACTGGTGCTTTCATATATTTGTGACAATTTTTGAG
TAATACTGCATGAAAATGTCCCCATATTACATCCATTCAGAAGTTTTGTTGTACTATAAA
GTTGGGAAAAAAAGAATGAGAGAAATGAAGCTGGAAAGGAAAACAAACTCAGTATCTTGA
AAACTGAAATGACTCCAGAGCCTTAGCCATGCCTAAAATACCTCCTACTTAACAGTGGCA
CCCGCACCTCTTCATCGTATTTTCCAGAATCCAAAGCATTTGGGTTTTATCCAGGATCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCCTTTGACAAGCTGAGTTGTCCAGTGTAGCCAGTTCGGTTCAACGGCATTGATGTTTC
GTCTTTGTGCCTTTCTTTTTCTTTTTCCCTTCTGCCCTCCCCCTCCTCCCATCCCTTCCC
AGGAATAAAGAGATAAGGCTGGACTTGTCTGTAAGACTGAACTCCCAGGATGAGCACCCA
AAGGTTTTAGGTCGATGTTCCCTGTGGTTTATCCTCTTGGTAATAACAAACAAAAATGCC
GGTTGTCTGTGTTCTTTTATCACTATTCCTAACATTTGTACATGATAGCTTTGATTCTGC
AAGTAAAAGTAAATCATGTGTTGTGACTGGTGCTTTCATATATTTGTGACAATTTTTGAG
TAATACTGCATGAAAATGTCCCCATATTACATCCATTCAGAAGTTTTGTTGTACTATAAA
GTTGGGAAAAAAAGAATGAGAGAAATGAAGCTGGAAAGGAAAACAAACTCAGTATCTTGA
AAACTGAAATGACTCCAGAGCCTTAGCCATGCCTAAAATACCTCCTACTTAACAGTGGCA
CCCGCACCTCTTCATCGTATTTTCCAGAATCCAAAGCATTTGGGTTTTATCCAGGATCCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               38-151, - strand, RNAz p=0.520393

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               38-151, - strand, RNAz p=0.520393

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-600, gnl|bosTau2|chr10 (29719853-29719252)
               

               
               1-600, gnl|Hg17|chr14 (51503550-51504159)
               

               
               1-600, gnl|Mm7|chr14 (17533411-17532766)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-600, gnl|bosTau2|chr10 (29719853-29719252)
               

               
               1-600, gnl|Hg17|chr14 (51503550-51504159)
               

               
               1-600, gnl|Mm7|chr14 (17533411-17532766)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ecc (0.23007)
               

               
               nca (0.136874)
               

               
               cly (0.120642)
               

               
               jej (0.0989218)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.23007)
               

               
               nca (0.136874)
               

               
               cly (0.120642)
               

               
               jej (0.0989218)

	1-600, gnl\|bosTau2\|chr10 (29719853-29719252)
	1-600, gnl\|Hg17\|chr14 (51503550-51504159)
	1-600, gnl\|Mm7\|chr14 (17533411-17532766)