Non-Coding RNA Search

Ss1.1-rjej18b_a11.5

Sequence:


               
               ACCAGGACTGCGCACTCCAGCACCCTGGCTGCTGGTTCCTCGGTGCCATGGGGACCCTGG
AGACCCTTCTTCTGCTCAGCGCCCTGCTCCTATCGCCAGCTGAGGCCCAGCAGGCCTCAG
AGTATCGCCTGAAGCCCTGGCTGGTGGGCCTGGCTGCGGTTGTGGGGTTCCTGTTCATCG
TCTTTGTCCTCATGCTGACCAACCGTCTCTGGTGCTCCAAAGAGAGAGCTGAGGATGAAG
AGGGGTCCATACTGAGAATGAATACCAACCCGTATGAGAATGTGGACTTGAGTAAAGAAG
GCAAGAAGGAGAAGAAAGAGAAAGAGAAAAAGACTAATAACAACAAAAAGGCTGAGGACA
AAAAGTCCAAGAAGAAAGGAGAGAGCAACTTGGGGCTGGAGCTGGAGGAGAAAGAGGAGC
CCCAGGACGAGGAGAAAGTCAAGAACACGGCCATGTGAAGACTCCACAGCCACCACCTCC
AGGCAGCCCCCCAGAGATGCCACTTCCACGCCCTAGAAGCTATGACCTGGACGTGAAGCC
AGCACAGTGACTTCATCTGGGGTTGAGAGTACAGTGCCCTGAATGAAGACACTTGGGACC
CACCCTCCCCCCTCAAGGAAGGCTCTTTGTGCATTATGTGGTCTATATGTGTTATGATTG
GTTCTGCCTGGTGATTCTTCTTGCACTTGAAGAGCATTCCTGGTTACCAAGAAACCCCCA
AGCCGCTGCAGTCTCATGGCTCCACTTGCTTCTACCCACCGTCTGCTTTCTTTCCTCTCT
GCCTGATATCTGTCAGCCAGAACTTCCTCCCTCCCACTCAGCCTCAGGACCAGTATTGGC
CAGAGGCTGCCTCTTGGGGAGCCTTTCAGAGGGCTCCCATCATCCCTCGGGACTTAGTTT
CTGCTGTGGGAGACAGGGTGGGGGCAATGCCCCGGCAGGTGTGGGAGACCAAACTCCACA
GAGCCCAGATGCCCAGGGCAGATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCAGGACTGCGCACTCCAGCACCCTGGCTGCTGGTTCCTCGGTGCCATGGGGACCCTGG
AGACCCTTCTTCTGCTCAGCGCCCTGCTCCTATCGCCAGCTGAGGCCCAGCAGGCCTCAG
AGTATCGCCTGAAGCCCTGGCTGGTGGGCCTGGCTGCGGTTGTGGGGTTCCTGTTCATCG
TCTTTGTCCTCATGCTGACCAACCGTCTCTGGTGCTCCAAAGAGAGAGCTGAGGATGAAG
AGGGGTCCATACTGAGAATGAATACCAACCCGTATGAGAATGTGGACTTGAGTAAAGAAG
GCAAGAAGGAGAAGAAAGAGAAAGAGAAAAAGACTAATAACAACAAAAAGGCTGAGGACA
AAAAGTCCAAGAAGAAAGGAGAGAGCAACTTGGGGCTGGAGCTGGAGGAGAAAGAGGAGC
CCCAGGACGAGGAGAAAGTCAAGAACACGGCCATGTGAAGACTCCACAGCCACCACCTCC
AGGCAGCCCCCCAGAGATGCCACTTCCACGCCCTAGAAGCTATGACCTGGACGTGAAGCC
AGCACAGTGACTTCATCTGGGGTTGAGAGTACAGTGCCCTGAATGAAGACACTTGGGACC
CACCCTCCCCCCTCAAGGAAGGCTCTTTGTGCATTATGTGGTCTATATGTGTTATGATTG
GTTCTGCCTGGTGATTCTTCTTGCACTTGAAGAGCATTCCTGGTTACCAAGAAACCCCCA
AGCCGCTGCAGTCTCATGGCTCCACTTGCTTCTACCCACCGTCTGCTTTCTTTCCTCTCT
GCCTGATATCTGTCAGCCAGAACTTCCTCCCTCCCACTCAGCCTCAGGACCAGTATTGGC
CAGAGGCTGCCTCTTGGGGAGCCTTTCAGAGGGCTCCCATCATCCCTCGGGACTTAGTTT
CTGCTGTGGGAGACAGGGTGGGGGCAATGCCCCGGCAGGTGTGGGAGACCAAACTCCACA
GAGCCCAGATGCCCAGGGCAGATT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q9P059_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9P059_HUMAN

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               451-570, - strand, RNAz p=0.630674
               

               
               797-900, - strand, RNAz p=0.842675

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               451-570, - strand, RNAz p=0.630674
               

               
               797-900, - strand, RNAz p=0.842675

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               106-222, gnl|bosTau2|chr7 (16262520-16262404)
               

               
               106-222, gnl|canFam2|chr20 (58975468-58975345)
               

               
               106-222, gnl|danRer3|chr15 (16119797-16119679)
               

               
               106-222, gnl|echTel1|scaffold_58130 (335-219)
               

               
               106-222, gnl|galGal2|chrUn (145698342-145698424)
               

               
               106-222, gnl|hg17|chr19 (3429820-3429943)
               

               
               106-222, gnl|Hg17|chr19 (3429941-3429820)
               

               
               106-222, gnl|loxAfr1|scaffold_114948 (922-1043)
               

               
               106-222, gnl|mm7|chr10 (81185890-81185767)
               

               
               106-222, gnl|Mm7|chr10 (81185781-81185888)
               

               
               106-222, gnl|monDom2|scaffold_122 (1410440-1410317)
               

               
               106-222, gnl|rheMac2|chr19 (3313871-3313994)
               

               
               106-222, gnl|xenTro1|scaffold_613 (111392-111281)
               


               
               291-983, gnl|bosTau2|chr7 (16260906-16260234)
               

               
               291-983, gnl|Hg17|chr19 (3425996-3425273)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               106-222, gnl|bosTau2|chr7 (16262520-16262404)
               

               
               106-222, gnl|canFam2|chr20 (58975468-58975345)
               

               
               106-222, gnl|danRer3|chr15 (16119797-16119679)
               

               
               106-222, gnl|echTel1|scaffold_58130 (335-219)
               

               
               106-222, gnl|galGal2|chrUn (145698342-145698424)
               

               
               106-222, gnl|hg17|chr19 (3429820-3429943)
               

               
               106-222, gnl|Hg17|chr19 (3429941-3429820)
               

               
               106-222, gnl|loxAfr1|scaffold_114948 (922-1043)
               

               
               106-222, gnl|mm7|chr10 (81185890-81185767)
               

               
               106-222, gnl|Mm7|chr10 (81185781-81185888)
               

               
               106-222, gnl|monDom2|scaffold_122 (1410440-1410317)
               

               
               106-222, gnl|rheMac2|chr19 (3313871-3313994)
               

               
               106-222, gnl|xenTro1|scaffold_613 (111392-111281)
               


               
               291-983, gnl|bosTau2|chr7 (16260906-16260234)
               

               
               291-983, gnl|Hg17|chr19 (3425996-3425273)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               jej (4.5504)
               

               
               duo (1.90081)
               

               
               ill (1.75593)
               

               
               nje (1.32736)
               

               
               sin (0.874738)
               

               
               cje (0.826173)
               

               
               eje (0.296501)
               

               
               cki (0.165235)
               

               
               nco (0.161734)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (4.5504)
               

               
               duo (1.90081)
               

               
               ill (1.75593)
               

               
               nje (1.32736)
               

               
               sin (0.874738)
               

               
               cje (0.826173)
               

               
               eje (0.296501)
               

               
               cki (0.165235)
               

               
               nco (0.161734)

	451-570, - strand, RNAz p=0.630674
	797-900, - strand, RNAz p=0.842675

	106-222, gnl\|bosTau2\|chr7 (16262520-16262404)
	106-222, gnl\|canFam2\|chr20 (58975468-58975345)
	106-222, gnl\|danRer3\|chr15 (16119797-16119679)
	106-222, gnl\|echTel1\|scaffold_58130 (335-219)
	106-222, gnl\|galGal2\|chrUn (145698342-145698424)
	106-222, gnl\|hg17\|chr19 (3429820-3429943)
	106-222, gnl\|Hg17\|chr19 (3429941-3429820)
	106-222, gnl\|loxAfr1\|scaffold_114948 (922-1043)
	106-222, gnl\|mm7\|chr10 (81185890-81185767)
	106-222, gnl\|Mm7\|chr10 (81185781-81185888)
	106-222, gnl\|monDom2\|scaffold_122 (1410440-1410317)
	106-222, gnl\|rheMac2\|chr19 (3313871-3313994)
	106-222, gnl\|xenTro1\|scaffold_613 (111392-111281)

	291-983, gnl\|bosTau2\|chr7 (16260906-16260234)
	291-983, gnl\|Hg17\|chr19 (3425996-3425273)

	jej (4.5504)
	duo (1.90081)
	ill (1.75593)
	nje (1.32736)
	sin (0.874738)
	cje (0.826173)
	eje (0.296501)
	cki (0.165235)
	nco (0.161734)