Non-Coding RNA Search

Ss1.1-rjej19b_n9.5

Sequence:


               
               GAAAAAAAAAATTTTTTTTTTTTTAATTTAAAAGAGGCTCTAACGGTCGCCAGGCCAGAG
AACCACGTAAGGAAAGTGGAGAGTAACTTCATTGGTGGGGGAAGGGGCAGGTGCCCTGGA
GGGGCGGGCGGGGCGGGAGGTACCAGGGGAGTTGGCGAAATGTGGGGGTTCCCTCTGCAT
GCAGCAGCCCCCCACCCCGGGCGCTGTCCCTGTGTTCATATGTAGTTTGAAAATGCTATT
TATATTGTAAAGAGAATAAAAAGGAAGCGGCCAGACGCCCCTCTGGCCGCATGGCCAGTC
CTTCTGGGTCGCACCCGGTCGGTCGTGGGTTCCCAGACTGGTGCAGACAGGTGGCGGCAC
AGCAAAGGGAAATGCACTTTCCCCACGAAGATATATCTGTGTCTATGTGCGAAAACGGCA
AGAAAAAAGAAAACCCACCCCCTCTGATTTTTTTCCTACCCGAGATTAAGGATGCGCTGT
ATTTTTGCCTAATTCCCCTGCCTCTAGGTTCATAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAAAAAAAATTTTTTTTTTTTTAATTTAAAAGAGGCTCTAACGGTCGCCAGGCCAGAG
AACCACGTAAGGAAAGTGGAGAGTAACTTCATTGGTGGGGGAAGGGGCAGGTGCCCTGGA
GGGGCGGGCGGGGCGGGAGGTACCAGGGGAGTTGGCGAAATGTGGGGGTTCCCTCTGCAT
GCAGCAGCCCCCCACCCCGGGCGCTGTCCCTGTGTTCATATGTAGTTTGAAAATGCTATT
TATATTGTAAAGAGAATAAAAAGGAAGCGGCCAGACGCCCCTCTGGCCGCATGGCCAGTC
CTTCTGGGTCGCACCCGGTCGGTCGTGGGTTCCCAGACTGGTGCAGACAGGTGGCGGCAC
AGCAAAGGGAAATGCACTTTCCCCACGAAGATATATCTGTGTCTATGTGCGAAAACGGCA
AGAAAAAAGAAAACCCACCCCCTCTGATTTTTTTCCTACCCGAGATTAAGGATGCGCTGT
ATTTTTGCCTAATTCCCCTGCCTCTAGGTTCATAAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               32-201, - strand, RNAz p=0.846854

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               32-201, - strand, RNAz p=0.846854

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               19-287, gnl|bosTau2|chr7 (14568577-14568302)
               

               
               19-287, gnl|Hg17|chr19 (5103970-5104351)
               


               
               292-516, gnl|bosTau2|chr7 (14568273-14568048)
               

               
               292-516, gnl|canFam2|chr20 (57658720-57658413)
               

               
               292-516, gnl|dasNov1|scaffold_81846 (2945-3264)
               

               
               292-516, gnl|galGal2|chr28 (4030734-4030309)
               

               
               292-516, gnl|hg17|chr19 (5104306-5104609)
               

               
               292-516, gnl|Hg17|chr19 (5104362-5104581)
               

               
               292-516, gnl|mm7|chr17 (54560825-54561105)
               

               
               292-516, gnl|Mm7|chr17 (54560891-54561078)
               

               
               292-516, gnl|panTro1|chr20 (5436233-5436536)
               

               
               292-516, gnl|rheMac2|chr19 (5064175-5064478)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-287, gnl|bosTau2|chr7 (14568577-14568302)
               

               
               19-287, gnl|Hg17|chr19 (5103970-5104351)
               


               
               292-516, gnl|bosTau2|chr7 (14568273-14568048)
               

               
               292-516, gnl|canFam2|chr20 (57658720-57658413)
               

               
               292-516, gnl|dasNov1|scaffold_81846 (2945-3264)
               

               
               292-516, gnl|galGal2|chr28 (4030734-4030309)
               

               
               292-516, gnl|hg17|chr19 (5104306-5104609)
               

               
               292-516, gnl|Hg17|chr19 (5104362-5104581)
               

               
               292-516, gnl|mm7|chr17 (54560825-54561105)
               

               
               292-516, gnl|Mm7|chr17 (54560891-54561078)
               

               
               292-516, gnl|panTro1|chr20 (5436233-5436536)
               

               
               292-516, gnl|rheMac2|chr19 (5064175-5064478)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               fty (0.351679)
               

               
               fce (0.271592)
               

               
               jej (0.197844)
               

               
               fbs (0.175346)
               

               
               csp (0.161186)
               

               
               cst (0.140036)
               

               
               ute (0.132784)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.351679)
               

               
               fce (0.271592)
               

               
               jej (0.197844)
               

               
               fbs (0.175346)
               

               
               csp (0.161186)
               

               
               cst (0.140036)
               

               
               ute (0.132784)

	19-287, gnl\|bosTau2\|chr7 (14568577-14568302)
	19-287, gnl\|Hg17\|chr19 (5103970-5104351)

	292-516, gnl\|bosTau2\|chr7 (14568273-14568048)
	292-516, gnl\|canFam2\|chr20 (57658720-57658413)
	292-516, gnl\|dasNov1\|scaffold_81846 (2945-3264)
	292-516, gnl\|galGal2\|chr28 (4030734-4030309)
	292-516, gnl\|hg17\|chr19 (5104306-5104609)
	292-516, gnl\|Hg17\|chr19 (5104362-5104581)
	292-516, gnl\|mm7\|chr17 (54560825-54561105)
	292-516, gnl\|Mm7\|chr17 (54560891-54561078)
	292-516, gnl\|panTro1\|chr20 (5436233-5436536)
	292-516, gnl\|rheMac2\|chr19 (5064175-5064478)

	fty (0.351679)
	fce (0.271592)
	jej (0.197844)
	fbs (0.175346)
	csp (0.161186)
	cst (0.140036)
	ute (0.132784)