Non-Coding RNA Search

Ss1.1-rjej20b_d15.5

Sequence:


               
               AGTAGGTCTGGGGTAAGGGCTCAGTTTCTGAACGTCTAACCCGCTCTCAAGTGCTGTGAC
GGCCCGCGAACCACACTTTGAGTAGCGAGGGCTGCGTCTCCTCCCCACAGGCGATGCCCC
AGAAGAGGAGGTCAGTCTCAGCAAGATGGTGATGAAATTCTGGGCCAACTTTGCTCGCAG
TTGGTGAGCCGGGGGCAAAAATGGGGCGGAGTTGGGAAGGGGCAGGGAAGAGCACGGTCG
CGCGGAGGAACGTTCACCGTGTGATGGGCAAACTCCGGGCCCTGTGACCTCTGACACGAG
AGCTCCCTCAAAGGACAGGCTGCCCAGGAGGTGGGGCGCCTTCTGTCTCTGCGGGCACTA
GAGACTCTTGGCAGAGGCTGAAGCCACGGGGTCCCTGACAACCTCAGAGGGTTGCTGGGA
TGACACAGTCGCTTTGGGCAATTTCTGTTTGATTCTGCTCTCAGGAACCCCAATGGGGAG
GGGCTGCCCCATTGGCCGATGTACGACCAGGAAGAAGGGTACCTTCAGATCGGCGTCAAC
ACCCAGGCAGCCAAGAGGCTGAAAGGTGAAGAAGTGGCCTTCTGGAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTAGGTCTGGGGTAAGGGCTCAGTTTCTGAACGTCTAACCCGCTCTCAAGTGCTGTGAC
GGCCCGCGAACCACACTTTGAGTAGCGAGGGCTGCGTCTCCTCCCCACAGGCGATGCCCC
AGAAGAGGAGGTCAGTCTCAGCAAGATGGTGATGAAATTCTGGGCCAACTTTGCTCGCAG
TTGGTGAGCCGGGGGCAAAAATGGGGCGGAGTTGGGAAGGGGCAGGGAAGAGCACGGTCG
CGCGGAGGAACGTTCACCGTGTGATGGGCAAACTCCGGGCCCTGTGACCTCTGACACGAG
AGCTCCCTCAAAGGACAGGCTGCCCAGGAGGTGGGGCGCCTTCTGTCTCTGCGGGCACTA
GAGACTCTTGGCAGAGGCTGAAGCCACGGGGTCCCTGACAACCTCAGAGGGTTGCTGGGA
TGACACAGTCGCTTTGGGCAATTTCTGTTTGATTCTGCTCTCAGGAACCCCAATGGGGAG
GGGCTGCCCCATTGGCCGATGTACGACCAGGAAGAAGGGTACCTTCAGATCGGCGTCAAC
ACCCAGGCAGCCAAGAGGCTGAAAGGTGAAGAAGTGGCCTTCTGGAAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               409-587, + strand, RNAz p=0.989427

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               409-587, + strand, RNAz p=0.989427

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC009706, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC009706, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-587, gnl|bosTau2|chr18 (21331201-21330617)
               

               
               1-587, gnl|Hg17|chr16 (54395131-54394523)
               

               
               1-587, gnl|Mm7|chr8 (91791724-91791143)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-587, gnl|bosTau2|chr18 (21331201-21330617)
               

               
               1-587, gnl|Hg17|chr16 (54395131-54394523)
               

               
               1-587, gnl|Mm7|chr8 (91791724-91791143)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jej (0.0989218)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.0989218)

	1-587, gnl\|bosTau2\|chr18 (21331201-21330617)
	1-587, gnl\|Hg17\|chr16 (54395131-54394523)
	1-587, gnl\|Mm7\|chr8 (91791724-91791143)