Ss1.1-rjej20b_k5.5
|
TCCTCCAAAGGTAAAACCCAGAGTTCCTGCTCCTACTGGTGTGTTTGACGGACCTCTGCC
TAGTCCACCTCTACCACCGCCAAGAGATCCTCTTCCTGATACCCCTCCACCGGTTCCCCT
TCGGCCTCCAGAACACTTTATAAACTGTCCATTCACTCTCCAGCCACCTCCACTGGGACA
TCTTCACAGAGATCCAGACTGGTTCAGAGATGTTAGTATGTGTCCAAATTCTCCAAACAC
TCCTCCAAGCACACCATCTCCAAGAGTACCACGTCGATGCTATGTGCTCAGTTCTAGTCA
AAATAATCTCGCTCATCCTCAAGCCCCCCCCATTCCACCAAGGCAGAATTCAAGCCCTCA
CCTACCAAAACTGCCACCAAAGACTTATAAACGGGAGCTTTCGCACCCCCCATTGTATAG
ACTGCCTTTGCTAGAAAATGCAGAAACTCCTCAATGACCTTAGCCATATGTAGTCATTGA
CACTGGAATGGTATTTGTAAAGTTTTTTTTTAATTTATTCAAAAATGCATAGTATTTTAG
TACTTTTTAAAAATAATGCTCTTACAAAAATGCTACTGATCAAATAAGCTTTTAAAAATT
GGAAAAATGAAAATACAGAAGTCCTTTACCATTATCCTCAGGTGATCAGTAGCATTGCCT
TGTCTTAGATCCTCAGTGCTGCCAAAAGGCCAGTATAAAGAAATTATATTTGCACTGTAG
ACTCTGCTAAAATATGGTTTAAAGTGATAATTGATTGCACTGAAAGGGGATAGTGCATTT
GTGGAATTTTTCAAATTTGAGTAATAGATGACTTTTTAAGGCAGTGAATTTACACACGTA
TGGGGGGGGTGAGTGATACTGATTTTTTAAGCCTCTTTGACCATCTTCTAGTTTTTACAT
CTAGTTTTTACATTTAGGAAAATTGTGAATAACACCCACTGTTCTTAAACTCTTTAATGC
CATGTCTTAAATGCCAGAATTTGCTGCTGAAGACAAAAATGAAAAAGAGAATGAAAATAA
TAGAATGCACTGTGTTTATTATTTTGTCAAAATGTAAACAGACTACCTAACCCAATCATA
GAGGGAAAAAGGGCATATATCTTATACAGATGTGCCTTTTTGTTTTTGCAGACTATGATG
TCTTTAGCTAACGAGTTGCCTATTGTTTTGGGATGTAAAGTTAATATGCCATATATGTAC
AGTTTTGTTTATATTGTATATTTAAAGACAGTGCTAATAATGTATATAAGTTTATGTGAC
TTAAGGCCTATAATACAATCTGCTACTTTACTAATTCATGAATTCAGAGGACAAGTTTCT
TATGGCCTAGGAACCAACTGCATTGCCTTGAAAACCTAATAACTTTCCCTGTAAATCCTG
TGTTAATAAAATTTTTTAAAATATTTTTTTAGATTGGTAATATTTAAACCAGCATATACT
TAAAGCTTTATTAAACTTTTTAATCAGAAAAGTGAGTAAAACTTTTATTTGCCATTTGAT
TTGGACTCCTTCCCTCAAAGTGATGAAAAAGTGTGTTTTGCTCTCAGTGCCACAGCAGCA
GTTGTAAAGTAG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TCCTCCAAAGGTAAAACCCAGAGTTCCTGCTCCTACTGGTGTGTTTGACGGACCTCTGCC
TAGTCCACCTCTACCACCGCCAAGAGATCCTCTTCCTGATACCCCTCCACCGGTTCCCCT
TCGGCCTCCAGAACACTTTATAAACTGTCCATTCACTCTCCAGCCACCTCCACTGGGACA
TCTTCACAGAGATCCAGACTGGTTCAGAGATGTTAGTATGTGTCCAAATTCTCCAAACAC
TCCTCCAAGCACACCATCTCCAAGAGTACCACGTCGATGCTATGTGCTCAGTTCTAGTCA
AAATAATCTCGCTCATCCTCAAGCCCCCCCCATTCCACCAAGGCAGAATTCAAGCCCTCA
CCTACCAAAACTGCCACCAAAGACTTATAAACGGGAGCTTTCGCACCCCCCATTGTATAG
ACTGCCTTTGCTAGAAAATGCAGAAACTCCTCAATGACCTTAGCCATATGTAGTCATTGA
CACTGGAATGGTATTTGTAAAGTTTTTTTTTAATTTATTCAAAAATGCATAGTATTTTAG
TACTTTTTAAAAATAATGCTCTTACAAAAATGCTACTGATCAAATAAGCTTTTAAAAATT
GGAAAAATGAAAATACAGAAGTCCTTTACCATTATCCTCAGGTGATCAGTAGCATTGCCT
TGTCTTAGATCCTCAGTGCTGCCAAAAGGCCAGTATAAAGAAATTATATTTGCACTGTAG
ACTCTGCTAAAATATGGTTTAAAGTGATAATTGATTGCACTGAAAGGGGATAGTGCATTT
GTGGAATTTTTCAAATTTGAGTAATAGATGACTTTTTAAGGCAGTGAATTTACACACGTA
TGGGGGGGGTGAGTGATACTGATTTTTTAAGCCTCTTTGACCATCTTCTAGTTTTTACAT
CTAGTTTTTACATTTAGGAAAATTGTGAATAACACCCACTGTTCTTAAACTCTTTAATGC
CATGTCTTAAATGCCAGAATTTGCTGCTGAAGACAAAAATGAAAAAGAGAATGAAAATAA
TAGAATGCACTGTGTTTATTATTTTGTCAAAATGTAAACAGACTACCTAACCCAATCATA
GAGGGAAAAAGGGCATATATCTTATACAGATGTGCCTTTTTGTTTTTGCAGACTATGATG
TCTTTAGCTAACGAGTTGCCTATTGTTTTGGGATGTAAAGTTAATATGCCATATATGTAC
AGTTTTGTTTATATTGTATATTTAAAGACAGTGCTAATAATGTATATAAGTTTATGTGAC
TTAAGGCCTATAATACAATCTGCTACTTTACTAATTCATGAATTCAGAGGACAAGTTTCT
TATGGCCTAGGAACCAACTGCATTGCCTTGAAAACCTAATAACTTTCCCTGTAAATCCTG
TGTTAATAAAATTTTTTAAAATATTTTTTTAGATTGGTAATATTTAAACCAGCATATACT
TAAAGCTTTATTAAACTTTTTAATCAGAAAAGTGAGTAAAACTTTTATTTGCCATTTGAT
TTGGACTCCTTCCCTCAAAGTGATGAAAAAGTGTGTTTTGCTCTCAGTGCCACAGCAGCA
GTTGTAAAGTAG
|
|
gi|61811537|ref|XP_608440.1| |
Protein identifier
|
gi|61811537|ref|XP_608440.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
pro (0.512033) |
|
nmm (0.265604) |
|
cty (0.20816) |
|
fcc (0.197785) |
|
sin (0.174948) |
|
csp (0.161186) |
|
ssp (0.13552) |
|
ecc (0.115035) |
|
jej (0.0989218) |
|
pro (0.512033) |
|
nmm (0.265604) |
|
cty (0.20816) |
|
fcc (0.197785) |
|
sin (0.174948) |
|
csp (0.161186) |
|
ssp (0.13552) |
|
ecc (0.115035) |
|
jej (0.0989218) |