Non-Coding RNA Search

Ss1.1-rjej20b_k5.5

Sequence:


               
               TCCTCCAAAGGTAAAACCCAGAGTTCCTGCTCCTACTGGTGTGTTTGACGGACCTCTGCC
TAGTCCACCTCTACCACCGCCAAGAGATCCTCTTCCTGATACCCCTCCACCGGTTCCCCT
TCGGCCTCCAGAACACTTTATAAACTGTCCATTCACTCTCCAGCCACCTCCACTGGGACA
TCTTCACAGAGATCCAGACTGGTTCAGAGATGTTAGTATGTGTCCAAATTCTCCAAACAC
TCCTCCAAGCACACCATCTCCAAGAGTACCACGTCGATGCTATGTGCTCAGTTCTAGTCA
AAATAATCTCGCTCATCCTCAAGCCCCCCCCATTCCACCAAGGCAGAATTCAAGCCCTCA
CCTACCAAAACTGCCACCAAAGACTTATAAACGGGAGCTTTCGCACCCCCCATTGTATAG
ACTGCCTTTGCTAGAAAATGCAGAAACTCCTCAATGACCTTAGCCATATGTAGTCATTGA
CACTGGAATGGTATTTGTAAAGTTTTTTTTTAATTTATTCAAAAATGCATAGTATTTTAG
TACTTTTTAAAAATAATGCTCTTACAAAAATGCTACTGATCAAATAAGCTTTTAAAAATT
GGAAAAATGAAAATACAGAAGTCCTTTACCATTATCCTCAGGTGATCAGTAGCATTGCCT
TGTCTTAGATCCTCAGTGCTGCCAAAAGGCCAGTATAAAGAAATTATATTTGCACTGTAG
ACTCTGCTAAAATATGGTTTAAAGTGATAATTGATTGCACTGAAAGGGGATAGTGCATTT
GTGGAATTTTTCAAATTTGAGTAATAGATGACTTTTTAAGGCAGTGAATTTACACACGTA
TGGGGGGGGTGAGTGATACTGATTTTTTAAGCCTCTTTGACCATCTTCTAGTTTTTACAT
CTAGTTTTTACATTTAGGAAAATTGTGAATAACACCCACTGTTCTTAAACTCTTTAATGC
CATGTCTTAAATGCCAGAATTTGCTGCTGAAGACAAAAATGAAAAAGAGAATGAAAATAA
TAGAATGCACTGTGTTTATTATTTTGTCAAAATGTAAACAGACTACCTAACCCAATCATA
GAGGGAAAAAGGGCATATATCTTATACAGATGTGCCTTTTTGTTTTTGCAGACTATGATG
TCTTTAGCTAACGAGTTGCCTATTGTTTTGGGATGTAAAGTTAATATGCCATATATGTAC
AGTTTTGTTTATATTGTATATTTAAAGACAGTGCTAATAATGTATATAAGTTTATGTGAC
TTAAGGCCTATAATACAATCTGCTACTTTACTAATTCATGAATTCAGAGGACAAGTTTCT
TATGGCCTAGGAACCAACTGCATTGCCTTGAAAACCTAATAACTTTCCCTGTAAATCCTG
TGTTAATAAAATTTTTTAAAATATTTTTTTAGATTGGTAATATTTAAACCAGCATATACT
TAAAGCTTTATTAAACTTTTTAATCAGAAAAGTGAGTAAAACTTTTATTTGCCATTTGAT
TTGGACTCCTTCCCTCAAAGTGATGAAAAAGTGTGTTTTGCTCTCAGTGCCACAGCAGCA
GTTGTAAAGTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCTCCAAAGGTAAAACCCAGAGTTCCTGCTCCTACTGGTGTGTTTGACGGACCTCTGCC
TAGTCCACCTCTACCACCGCCAAGAGATCCTCTTCCTGATACCCCTCCACCGGTTCCCCT
TCGGCCTCCAGAACACTTTATAAACTGTCCATTCACTCTCCAGCCACCTCCACTGGGACA
TCTTCACAGAGATCCAGACTGGTTCAGAGATGTTAGTATGTGTCCAAATTCTCCAAACAC
TCCTCCAAGCACACCATCTCCAAGAGTACCACGTCGATGCTATGTGCTCAGTTCTAGTCA
AAATAATCTCGCTCATCCTCAAGCCCCCCCCATTCCACCAAGGCAGAATTCAAGCCCTCA
CCTACCAAAACTGCCACCAAAGACTTATAAACGGGAGCTTTCGCACCCCCCATTGTATAG
ACTGCCTTTGCTAGAAAATGCAGAAACTCCTCAATGACCTTAGCCATATGTAGTCATTGA
CACTGGAATGGTATTTGTAAAGTTTTTTTTTAATTTATTCAAAAATGCATAGTATTTTAG
TACTTTTTAAAAATAATGCTCTTACAAAAATGCTACTGATCAAATAAGCTTTTAAAAATT
GGAAAAATGAAAATACAGAAGTCCTTTACCATTATCCTCAGGTGATCAGTAGCATTGCCT
TGTCTTAGATCCTCAGTGCTGCCAAAAGGCCAGTATAAAGAAATTATATTTGCACTGTAG
ACTCTGCTAAAATATGGTTTAAAGTGATAATTGATTGCACTGAAAGGGGATAGTGCATTT
GTGGAATTTTTCAAATTTGAGTAATAGATGACTTTTTAAGGCAGTGAATTTACACACGTA
TGGGGGGGGTGAGTGATACTGATTTTTTAAGCCTCTTTGACCATCTTCTAGTTTTTACAT
CTAGTTTTTACATTTAGGAAAATTGTGAATAACACCCACTGTTCTTAAACTCTTTAATGC
CATGTCTTAAATGCCAGAATTTGCTGCTGAAGACAAAAATGAAAAAGAGAATGAAAATAA
TAGAATGCACTGTGTTTATTATTTTGTCAAAATGTAAACAGACTACCTAACCCAATCATA
GAGGGAAAAAGGGCATATATCTTATACAGATGTGCCTTTTTGTTTTTGCAGACTATGATG
TCTTTAGCTAACGAGTTGCCTATTGTTTTGGGATGTAAAGTTAATATGCCATATATGTAC
AGTTTTGTTTATATTGTATATTTAAAGACAGTGCTAATAATGTATATAAGTTTATGTGAC
TTAAGGCCTATAATACAATCTGCTACTTTACTAATTCATGAATTCAGAGGACAAGTTTCT
TATGGCCTAGGAACCAACTGCATTGCCTTGAAAACCTAATAACTTTCCCTGTAAATCCTG
TGTTAATAAAATTTTTTAAAATATTTTTTTAGATTGGTAATATTTAAACCAGCATATACT
TAAAGCTTTATTAAACTTTTTAATCAGAAAAGTGAGTAAAACTTTTATTTGCCATTTGAT
TTGGACTCCTTCCCTCAAAGTGATGAAAAAGTGTGTTTTGCTCTCAGTGCCACAGCAGCA
GTTGTAAAGTAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61811537|ref|XP_608440.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61811537|ref|XP_608440.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               281-480, - strand, RNAz p=0.749226
               

               
               658-777, - strand, RNAz p=0.858074

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               281-480, - strand, RNAz p=0.749226
               

               
               658-777, - strand, RNAz p=0.858074

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1572, gnl|bosTau2|chr10 (27514916-27513360)
               

               
               1-1572, gnl|Hg17|chr14 (49655268-49653701)
               

               
               1-1572, gnl|Mm7|chr12 (67526718-67525004)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1572, gnl|bosTau2|chr10 (27514916-27513360)
               

               
               1-1572, gnl|Hg17|chr14 (49655268-49653701)
               

               
               1-1572, gnl|Mm7|chr12 (67526718-67525004)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               pro (0.512033)
               

               
               nmm (0.265604)
               

               
               cty (0.20816)
               

               
               fcc (0.197785)
               

               
               sin (0.174948)
               

               
               csp (0.161186)
               

               
               ssp (0.13552)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

Expressed library(ies): 9 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               nmm (0.265604)
               

               
               cty (0.20816)
               

               
               fcc (0.197785)
               

               
               sin (0.174948)
               

               
               csp (0.161186)
               

               
               ssp (0.13552)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

	281-480, - strand, RNAz p=0.749226
	658-777, - strand, RNAz p=0.858074

	1-1572, gnl\|bosTau2\|chr10 (27514916-27513360)
	1-1572, gnl\|Hg17\|chr14 (49655268-49653701)
	1-1572, gnl\|Mm7\|chr12 (67526718-67525004)

	pro (0.512033)
	nmm (0.265604)
	cty (0.20816)
	fcc (0.197785)
	sin (0.174948)
	csp (0.161186)
	ssp (0.13552)
	ecc (0.115035)
	jej (0.0989218)