Non-Coding RNA Search

Ss1.1-rjej20b_k7.5

Sequence:


               
               GTCCCCCGGTATCCTATTTCTGACTCTTTGCTTTTCCCAGCAGGCTATTTTCCTTTTAGA
TGTTAGCTGCTGAGAAGTTTCCCAAAATATTAGAGGAAAAGAAGAGGGAGATTTAAAAAT
GACTCTTCCTGACCTACCTTCATTGTTGTCACTCTTTCATTCCTTCTTGCCACCTTATGT
CCATTCTCTTTGCTTGCTAATCTGCCGAAAGGAGAGAGGTTAATATAAGTGGCAACATAT
TTGGTAGTAAAGAGCTTTGCACATTTTAAGAACTTGCTTTATAAAGATAATCAGATATGG
ATTCTCCCCATCCCACACACTTATGCATTTTTCCAAAGATGTCATTTTTTAAAAGGCACT
TTTTCAAACAATTAGTTTTGCCAAGCCAGGTGTTATATAGGTGTTGCAAAAAGTTTTCAA
AAAGTTTTCAAATGTCACTAGACTTTAAAAAAATCCGAAATCTCTATTCTGCAAACTTGA
CTCCCCTATTTAGCAATACTACTATGGATTCTTTGGTTTTTTTTTTAAGGGAAGCTTAAT
AGTTGGTAGATGGACTTTAATCTTTTAAAGACCTTTTACATCTAATGTAGCATTTACATA
AAAGTAAAAAATAAAAATGAATTGTAAAGTTAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCCCCCGGTATCCTATTTCTGACTCTTTGCTTTTCCCAGCAGGCTATTTTCCTTTTAGA
TGTTAGCTGCTGAGAAGTTTCCCAAAATATTAGAGGAAAAGAAGAGGGAGATTTAAAAAT
GACTCTTCCTGACCTACCTTCATTGTTGTCACTCTTTCATTCCTTCTTGCCACCTTATGT
CCATTCTCTTTGCTTGCTAATCTGCCGAAAGGAGAGAGGTTAATATAAGTGGCAACATAT
TTGGTAGTAAAGAGCTTTGCACATTTTAAGAACTTGCTTTATAAAGATAATCAGATATGG
ATTCTCCCCATCCCACACACTTATGCATTTTTCCAAAGATGTCATTTTTTAAAAGGCACT
TTTTCAAACAATTAGTTTTGCCAAGCCAGGTGTTATATAGGTGTTGCAAAAAGTTTTCAA
AAAGTTTTCAAATGTCACTAGACTTTAAAAAAATCCGAAATCTCTATTCTGCAAACTTGA
CTCCCCTATTTAGCAATACTACTATGGATTCTTTGGTTTTTTTTTTAAGGGAAGCTTAAT
AGTTGGTAGATGGACTTTAATCTTTTAAAGACCTTTTACATCTAATGTAGCATTTACATA
AAAGTAAAAAATAAAAATGAATTGTAAAGTTAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               132-251, + strand, RNAz p=0.98893

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               132-251, + strand, RNAz p=0.98893

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               168-250, + strand, RNAmicro p=0.999778

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               168-250, + strand, RNAmicro p=0.999778

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               14-633, gnl|bosTau2|chr19 (15724920-15724331)
               

               
               14-633, gnl|Hg17|chr17 (25547997-25547305)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-633, gnl|bosTau2|chr19 (15724920-15724331)
               

               
               14-633, gnl|Hg17|chr17 (25547997-25547305)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               ese (0.126502)
               

               
               jej (0.0989218)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               ese (0.126502)
               

               
               jej (0.0989218)

	14-633, gnl\|bosTau2\|chr19 (15724920-15724331)
	14-633, gnl\|Hg17\|chr17 (25547997-25547305)