Non-Coding RNA Search

Ss1.1-rjej20b_l18.5.5

Sequence:


               
               AAAACCTGGAGAAGATCTCCGTCACGGAGGGCATAGAGCGGGGCATCGTGGACAGCATCA
CCGGGCAGAGGCTCCTGGAGGCCCAGGCCTGCACGGGCGGCATCATCCACCCAACCACGG
GGCAGAAGCTGTCCCTTCAGGACGCGGTCGCCCAGGGCGTCATCGACCAGGATATGGCCA
CCCGGCTGAAGCCTGCTCAGAAAGCCTTCATCGGCTTCGAGGGGGTGAAGGGGAAGAAGA
AGATGTCAGCGGCGGAGGCGGTGAAAGAGAAATGGCTCCCCTACGAGGCGGGCCAGCGCT
TCCTGGAGTTCCAGTATCTCACCGGGGGCCTGGTGGACCCCGAAGTGAACGGGCGGATAA
GCACCGAAGAAGCCATCAGAAAGGGGTTCATCGACGGCCGGGCAGCTCAGAGGCTGCAAG
ACACCAGCAGCTACGCCAAGATCCTGACCTGCCCCAAAACCAAGCTGAAAATCTCCTACA
AGGATGCCATAAATCGCTCCATGGTGGAAGACATCACGGGCCTGCGCCTGCTGGAGGCCG
CCTCCGTGTCGTCCAAGGGCCTCCCCAGCCCTTATAACGTGTCCTCGGCCCCGGGCTCCC
GCTCCGGCTCCCGCTCTGGCTCCCGCTCTGGTTCTCGCTCGGGTTCCCGCAGCGGGTCCC
GGAGAGGAAGCTTCGACGCCACGAGCAATTCTTCCTACTCTTACTCCTACTCCTTTAGCA
GCAGCTCCATCGGGCACTAGGAGGAGCCAGCTGGCAACGGTTGCTAGACCTTGGCTTTCG
TTTCTATGAGTTTTCACTTTACTAAATAATAAAAGAAAAATCTCATGGTTGCAGGATAGC
GATAGAACTTCCCATGCTTCAGCAAACCTAGCCGTGGCCGGAATCCAGCAGGCAAGGCTG
ATCTGGCTTTTTATCTTCTTAGCGCGCCCTAACTAAAGTCATGCACTGGATGTAGTGTAC
GCAAAGCCGTGGTCAGCTGTAAGGATCGCACAAATCGAATCTAGAGTTGGTTTCTTCTCT
TCCGTGTTTAGATTTTTGATGCGTCTTCTTGAACTTCTTTTGGCCTGTGATACAGGTTTC
TGTCCTTGGAGATCATGAGCAAGTTCACCGTTGATAGTGTAGCGGTCATTCTCTTTCTCG
CCTCTTTCCATTTTTCTGTATTAGGAGAAAATTCCCCGATTCCCCCTCCCCCCAAAAGAA
TTCCCCCTCAAACCCCAGCATTTTGGAATGAATCTCCTTGAATCCTATTACCCACATAAC
TCTGAAGTGTACCTGTTTGGTTTGGTATTAATTTGACTGTATGTGCCTCACGGCAGCAGT
CTTTGCTTTGCTTCGAAAGTTTTCTGTGTATTCAGCTTGTCATTTTCTATGTCCTTGAAA
AAGGTGTCTTTATGAAGTTTGCTATTCTGGCAATAAACTTTTAGACATTTGAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAACCTGGAGAAGATCTCCGTCACGGAGGGCATAGAGCGGGGCATCGTGGACAGCATCA
CCGGGCAGAGGCTCCTGGAGGCCCAGGCCTGCACGGGCGGCATCATCCACCCAACCACGG
GGCAGAAGCTGTCCCTTCAGGACGCGGTCGCCCAGGGCGTCATCGACCAGGATATGGCCA
CCCGGCTGAAGCCTGCTCAGAAAGCCTTCATCGGCTTCGAGGGGGTGAAGGGGAAGAAGA
AGATGTCAGCGGCGGAGGCGGTGAAAGAGAAATGGCTCCCCTACGAGGCGGGCCAGCGCT
TCCTGGAGTTCCAGTATCTCACCGGGGGCCTGGTGGACCCCGAAGTGAACGGGCGGATAA
GCACCGAAGAAGCCATCAGAAAGGGGTTCATCGACGGCCGGGCAGCTCAGAGGCTGCAAG
ACACCAGCAGCTACGCCAAGATCCTGACCTGCCCCAAAACCAAGCTGAAAATCTCCTACA
AGGATGCCATAAATCGCTCCATGGTGGAAGACATCACGGGCCTGCGCCTGCTGGAGGCCG
CCTCCGTGTCGTCCAAGGGCCTCCCCAGCCCTTATAACGTGTCCTCGGCCCCGGGCTCCC
GCTCCGGCTCCCGCTCTGGCTCCCGCTCTGGTTCTCGCTCGGGTTCCCGCAGCGGGTCCC
GGAGAGGAAGCTTCGACGCCACGAGCAATTCTTCCTACTCTTACTCCTACTCCTTTAGCA
GCAGCTCCATCGGGCACTAGGAGGAGCCAGCTGGCAACGGTTGCTAGACCTTGGCTTTCG
TTTCTATGAGTTTTCACTTTACTAAATAATAAAAGAAAAATCTCATGGTTGCAGGATAGC
GATAGAACTTCCCATGCTTCAGCAAACCTAGCCGTGGCCGGAATCCAGCAGGCAAGGCTG
ATCTGGCTTTTTATCTTCTTAGCGCGCCCTAACTAAAGTCATGCACTGGATGTAGTGTAC
GCAAAGCCGTGGTCAGCTGTAAGGATCGCACAAATCGAATCTAGAGTTGGTTTCTTCTCT
TCCGTGTTTAGATTTTTGATGCGTCTTCTTGAACTTCTTTTGGCCTGTGATACAGGTTTC
TGTCCTTGGAGATCATGAGCAAGTTCACCGTTGATAGTGTAGCGGTCATTCTCTTTCTCG
CCTCTTTCCATTTTTCTGTATTAGGAGAAAATTCCCCGATTCCCCCTCCCCCCAAAAGAA
TTCCCCCTCAAACCCCAGCATTTTGGAATGAATCTCCTTGAATCCTATTACCCACATAAC
TCTGAAGTGTACCTGTTTGGTTTGGTATTAATTTGACTGTATGTGCCTCACGGCAGCAGT
CTTTGCTTTGCTTCGAAAGTTTTCTGTGTATTCAGCTTGTCATTTTCTATGTCCTTGAAA
AAGGTGTCTTTATGAAGTTTGCTATTCTGGCAATAAACTTTTAGACATTTGAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q8BP77_MOUSE

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q8BP77_MOUSE

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               80-239, - strand, RNAz p=0.682228
               

               
               600-719, - strand, RNAz p=0.708415

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-239, - strand, RNAz p=0.682228
               

               
               600-719, - strand, RNAz p=0.708415

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1433, gnl|bosTau2|chr23 (40072442-40070987)
               

               
               1-1433, gnl|Hg17|chr6 (7530371-7531806)
               

               
               1-1433, gnl|Mm7|chr13 (37616088-37617472)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1433, gnl|bosTau2|chr23 (40072442-40070987)
               

               
               1-1433, gnl|Hg17|chr6 (7530371-7531806)
               

               
               1-1433, gnl|Mm7|chr13 (37616088-37617472)

Expressed library(ies): 17 entry(ies)

More info

Expressed library(ies): 17 entry(ies)

Help | Less info


               
               ton (1.404)
               

               
               amn (0.417711)
               

               
               hea (0.408998)
               

               
               nep (0.36785)
               

               
               eru (0.240096)
               

               
               jej (0.197844)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               nco (0.161734)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (1.404)
               

               
               amn (0.417711)
               

               
               hea (0.408998)
               

               
               nep (0.36785)
               

               
               eru (0.240096)
               

               
               jej (0.197844)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               nco (0.161734)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)

	80-239, - strand, RNAz p=0.682228
	600-719, - strand, RNAz p=0.708415

	1-1433, gnl\|bosTau2\|chr23 (40072442-40070987)
	1-1433, gnl\|Hg17\|chr6 (7530371-7531806)
	1-1433, gnl\|Mm7\|chr13 (37616088-37617472)

	ton (1.404)
	amn (0.417711)
	hea (0.408998)
	nep (0.36785)
	eru (0.240096)
	jej (0.197844)
	col (0.195008)
	nlu (0.191681)
	cmu (0.186393)
	sag (0.182715)
	sin (0.174948)
	nco (0.161734)
	ski (0.146735)
	pty (0.142714)
	eep (0.122564)
	pgl (0.118483)
	cty (0.10408)