Non-Coding RNA Search

Ss1.1-rjej21b_e8.5

Sequence:


               
               ATCCAGCACACACCCACCGTAACCAGAGGCCACCACCATGACGAGGGACCAGAATGGAAC
CTGGGAGATGGAGAGTAACGACAACTTTGAAGGCTACATGAAGGCCCTGGATATTGATTT
TGCCACCCGCAAGATCGCTGTGCGTCTGACTCAGACGAAGATCATTGAGCAAGATGGCGA
TAAGTTCAAGACAAAAACCAACAGCACGTTCCGAAACTATGACTTGGATTTCACAGTCGG
GGTGGAGTTTGATGAGTACACAAAGGGCCTGGACAACCGGAATGTTAAGACACTGATCAT
CTGGGAAGGTGATGCCCTCGTGTGCGTGCAGAAGGGGGAAAAGGAGAACCGAGGCTGGAA
GCAGTGGGTCGAGGGGGACAAGCTGTACCTGGAGCTGACATGCGGTGACCAGGTGTGCCG
TCAAGTGTTCAAGAAGAAGTGATGGCCAGAGGGGGGGCCTAAGGAGCATGTGCTCTACAG
TCTCCAGGAAGAGTTTTCTGCTGGCTTTGGGAGAACAGCCACAGGGACTCTCCCACTCCT
GACAGCCCAATGGGACATCTAGATGGGTTTTAAACAGAATGAGTGTGTAACAGTGACAGG
CATAATCTTCCATCCTTGAAAGCTGGCATTAAATGAAAAACCAAAACCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCCAGCACACACCCACCGTAACCAGAGGCCACCACCATGACGAGGGACCAGAATGGAAC
CTGGGAGATGGAGAGTAACGACAACTTTGAAGGCTACATGAAGGCCCTGGATATTGATTT
TGCCACCCGCAAGATCGCTGTGCGTCTGACTCAGACGAAGATCATTGAGCAAGATGGCGA
TAAGTTCAAGACAAAAACCAACAGCACGTTCCGAAACTATGACTTGGATTTCACAGTCGG
GGTGGAGTTTGATGAGTACACAAAGGGCCTGGACAACCGGAATGTTAAGACACTGATCAT
CTGGGAAGGTGATGCCCTCGTGTGCGTGCAGAAGGGGGAAAAGGAGAACCGAGGCTGGAA
GCAGTGGGTCGAGGGGGACAAGCTGTACCTGGAGCTGACATGCGGTGACCAGGTGTGCCG
TCAAGTGTTCAAGAAGAAGTGATGGCCAGAGGGGGGGCCTAAGGAGCATGTGCTCTACAG
TCTCCAGGAAGAGTTTTCTGCTGGCTTTGGGAGAACAGCCACAGGGACTCTCCCACTCCT
GACAGCCCAATGGGACATCTAGATGGGTTTTAAACAGAATGAGTGTGTAACAGTGACAGG
CATAATCTTCCATCCTTGAAAGCTGGCATTAAATGAAAAACCAAAACCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               RET2_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               RET2_PIG

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               110-296, gnl|bosTau2|chr1 (81136045-81135859)
               

               
               110-296, gnl|Hg17|chr3 (140663831-140663645)
               

               
               110-296, gnl|Mm7|chr9 (98140280-98140464)
               


               
               384-545, gnl|bosTau2|chr1 (81125922-81125763)
               

               
               384-545, gnl|Hg17|chr3 (140654714-140654554)
               

               
               384-545, gnl|Mm7|chr9 (98151085-98151225)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               110-296, gnl|bosTau2|chr1 (81136045-81135859)
               

               
               110-296, gnl|Hg17|chr3 (140663831-140663645)
               

               
               110-296, gnl|Mm7|chr9 (98140280-98140464)
               


               
               384-545, gnl|bosTau2|chr1 (81125922-81125763)
               

               
               384-545, gnl|Hg17|chr3 (140654714-140654554)
               

               
               384-545, gnl|Mm7|chr9 (98151085-98151225)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               nje (5.97312)
               

               
               jej (2.67089)
               

               
               cje (1.15664)
               

               
               sin (0.69979)
               

               
               duo (0.518403)
               

               
               eje (0.296501)
               

               
               fat (0.147427)
               

               
               ute (0.132784)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (5.97312)
               

               
               jej (2.67089)
               

               
               cje (1.15664)
               

               
               sin (0.69979)
               

               
               duo (0.518403)
               

               
               eje (0.296501)
               

               
               fat (0.147427)
               

               
               ute (0.132784)

	110-296, gnl\|bosTau2\|chr1 (81136045-81135859)
	110-296, gnl\|Hg17\|chr3 (140663831-140663645)
	110-296, gnl\|Mm7\|chr9 (98140280-98140464)

	384-545, gnl\|bosTau2\|chr1 (81125922-81125763)
	384-545, gnl\|Hg17\|chr3 (140654714-140654554)
	384-545, gnl\|Mm7\|chr9 (98151085-98151225)

	nje (5.97312)
	jej (2.67089)
	cje (1.15664)
	sin (0.69979)
	duo (0.518403)
	eje (0.296501)
	fat (0.147427)
	ute (0.132784)