Non-Coding RNA Search

Ss1.1-rjej21b_g23.5

Sequence:


               
               GGGCGAGGCCGGTCATGGAGGCCCTCCGAAGGGCTCACGAGGCCGTGCTACGGCTGCTGC
TCTTCCGCCCCTGGGCCTCCGATGCTGCCTCCCGCCTGAAGCCCCGCGCCTCGGAGGTGC
TGACCCGGCACCTGCTACAGCGGCGCCTGCCGCACTGGACATCCTTCTGCGTGCCCTACA
GCGCAGTCCGCAACGACCAGTTCGGCCTCTCGCACTTCAATTGGCCGGTGCAGGGCGCCA
ACTACCACGTCCTGCGCACCGGCTGCTTCCCCTTCATCAAGTACCATTGCTCCAAGGCCC
CTTGGCAGGACCTGGCCCGGCAGGACCGGTTCTTCACGGCGCTCAAGGTCATCAACCTCG
GTATTCCAACTTTATTATATGGACTTGGCTCCTGGTTATTTGCTAGAGTCACAGAGACTG
TGCACACCAGTTATGGACCAATAACAGTTTATTTCCTAAATAAAGAAGATGAAGGTGCCA
TGTATTGAAAGTGAACATTTGGAGAACATAAATATCAGTAGATTTTCTCATGTGTATGTG
CAATATTTATTTTTGATCCTTTAAAATAAAACTTTTGCAAACATCAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCGAGGCCGGTCATGGAGGCCCTCCGAAGGGCTCACGAGGCCGTGCTACGGCTGCTGC
TCTTCCGCCCCTGGGCCTCCGATGCTGCCTCCCGCCTGAAGCCCCGCGCCTCGGAGGTGC
TGACCCGGCACCTGCTACAGCGGCGCCTGCCGCACTGGACATCCTTCTGCGTGCCCTACA
GCGCAGTCCGCAACGACCAGTTCGGCCTCTCGCACTTCAATTGGCCGGTGCAGGGCGCCA
ACTACCACGTCCTGCGCACCGGCTGCTTCCCCTTCATCAAGTACCATTGCTCCAAGGCCC
CTTGGCAGGACCTGGCCCGGCAGGACCGGTTCTTCACGGCGCTCAAGGTCATCAACCTCG
GTATTCCAACTTTATTATATGGACTTGGCTCCTGGTTATTTGCTAGAGTCACAGAGACTG
TGCACACCAGTTATGGACCAATAACAGTTTATTTCCTAAATAAAGAAGATGAAGGTGCCA
TGTATTGAAAGTGAACATTTGGAGAACATAAATATCAGTAGATTTTCTCATGTGTATGTG
CAATATTTATTTTTGATCCTTTAAAATAAAACTTTTGCAAACATCAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61869032|ref|XP_615283.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61869032|ref|XP_615283.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               160-279, - strand, RNAz p=0.659032

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-279, - strand, RNAz p=0.659032

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-362, gnl|bosTau2|chr10 (5927841-5927480)
               

               
               1-362, gnl|Hg17|chr15 (65600629-65600988)
               

               
               1-362, gnl|Mm7|chr9 (63427591-63427229)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-362, gnl|bosTau2|chr10 (5927841-5927480)
               

               
               1-362, gnl|Hg17|chr15 (65600629-65600988)
               

               
               1-362, gnl|Mm7|chr9 (63427591-63427229)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               che (0.408942)
               

               
               sto (0.359648)
               

               
               cbe (0.239234)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               cag (0.151194)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.408942)
               

               
               sto (0.359648)
               

               
               cbe (0.239234)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               cag (0.151194)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)

	1-362, gnl\|bosTau2\|chr10 (5927841-5927480)
	1-362, gnl\|Hg17\|chr15 (65600629-65600988)
	1-362, gnl\|Mm7\|chr9 (63427591-63427229)

	che (0.408942)
	sto (0.359648)
	cbe (0.239234)
	nlu (0.191681)
	cmu (0.186393)
	nep (0.183925)
	cje (0.165235)
	cki (0.165235)
	cag (0.151194)
	cst (0.140036)
	pla (0.133672)
	ova (0.129132)
	eru (0.120048)
	pgl (0.118483)
	jej (0.0989218)