Non-Coding RNA Search

Ss1.1-rjej21b_i5.5

Sequence:


               
               TTAGGAAGGGTGGGGTGGGGTAGAAGGCAGTCGAGGGGGGGGGCATCCAGACCCCCCATT
CTTCTACACGTGGATCTGTTCAAACAGCAAACACCCCCCAGCCGGCTGGAGCGGGCAGCA
GGCAAGGCAGGTGGGTGTTTCCAGAACTCTAGCAGAGCCTGTTTCCCCCTCCCCCCCCCG
GGGGGGGGTGGTCCCAACCTGTTTGGTGCTCACGGTGAGAGGGAGTTTGAATCTGTTTGC
AAAGTAGCCAACCCCCCAGCTCAACACACGGCTTTCCGTTCTGTGTGTTGTAAGAGAAAT
GTTTTGTCATCGCCACGTTCCTGATTAGTTCTGATTTCTTTTTAACAAATGTTATGATGA
TTAAGGCAATTTCCAGCACTTTAATGGCAAATTAATTGAGAATGTAAGACAATTGATGCT
GTCAAGGGCAAATAAAGCTGTTTATTAACCCCGAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAGGAAGGGTGGGGTGGGGTAGAAGGCAGTCGAGGGGGGGGGCATCCAGACCCCCCATT
CTTCTACACGTGGATCTGTTCAAACAGCAAACACCCCCCAGCCGGCTGGAGCGGGCAGCA
GGCAAGGCAGGTGGGTGTTTCCAGAACTCTAGCAGAGCCTGTTTCCCCCTCCCCCCCCCG
GGGGGGGGTGGTCCCAACCTGTTTGGTGCTCACGGTGAGAGGGAGTTTGAATCTGTTTGC
AAAGTAGCCAACCCCCCAGCTCAACACACGGCTTTCCGTTCTGTGTGTTGTAAGAGAAAT
GTTTTGTCATCGCCACGTTCCTGATTAGTTCTGATTTCTTTTTAACAAATGTTATGATGA
TTAAGGCAATTTCCAGCACTTTAATGGCAAATTAATTGAGAATGTAAGACAATTGATGCT
GTCAAGGGCAAATAAAGCTGTTTATTAACCCCGAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-454, gnl|bosTau2|chr29 (31983606-31983157)
               

               
               1-454, gnl|Hg17|chr11 (62040395-62039950)
               

               
               1-454, gnl|Mm7|chr19 (8698928-8699358)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-454, gnl|bosTau2|chr29 (31983606-31983157)
               

               
               1-454, gnl|Hg17|chr11 (62040395-62039950)
               

               
               1-454, gnl|Mm7|chr19 (8698928-8699358)

Expressed library(ies): 20 entry(ies)

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Expressed library(ies): 20 entry(ies)

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               ton (0.526501)
               

               
               jca (0.45584)
               

               
               nms (0.427716)
               

               
               amn (0.417711)
               

               
               eru (0.360144)
               

               
               ute (0.265569)
               

               
               ese (0.253004)
               

               
               jej (0.197844)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               cbl (0.114797)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.526501)
               

               
               jca (0.45584)
               

               
               nms (0.427716)
               

               
               amn (0.417711)
               

               
               eru (0.360144)
               

               
               ute (0.265569)
               

               
               ese (0.253004)
               

               
               jej (0.197844)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               cbl (0.114797)

	1-454, gnl\|bosTau2\|chr29 (31983606-31983157)
	1-454, gnl\|Hg17\|chr11 (62040395-62039950)
	1-454, gnl\|Mm7\|chr19 (8698928-8699358)

	ton (0.526501)
	jca (0.45584)
	nms (0.427716)
	amn (0.417711)
	eru (0.360144)
	ute (0.265569)
	ese (0.253004)
	jej (0.197844)
	aor (0.195274)
	nlu (0.191681)
	nep (0.183925)
	mcp (0.170648)
	nco (0.161734)
	isp (0.150376)
	ski (0.146735)
	pty (0.142714)
	lnt (0.142308)
	eep (0.122564)
	med (0.116252)
	cbl (0.114797)