Non-Coding RNA Search

Ss1.1-rjej21b_l17.5

Sequence:


               
               TCAAGAGAAATCTGGAGGGAGTTGGAAACCATCAAGTTTTTGAGGACACAAAGGGTGCAG
AAAAGATCGAGGAAAAGGGGTTAATCAGAGTTTCTCCCTATACCTGTCTTAGAAATAACA
GCATATTTTAATCAGAGATTTATGTTGCTATGAGGACAGATTCATCAAAAATGACGGATG
TGGAGCCTGTGGTCAACAATTTCGCATCATCAGCAAGGGCAGGCCGCCGGAATGCTCTAC
CAGACATCCAGGGTTCACCCACCACGGGTGGAACTTCGGAGCTGCCCCTCAAACTGGAAG
CCCTCTCCGTGAAGGAAGATGTGAAAAATAAAGATGAAGAAACAGCGCAAGACCAATCAG
AAAAGCCTGAAGATGAAGGAAAATGAAGGCTCATAACCTATCAAAAGTGCCGAATTTCTG
CACGTTAAAAGACTTAGTGGCTCTGCTTTCCTGAGATGTTTGATCTGGTAGTAACTATGG
TAACATTGCAGCCCTAAGCAACATTTATTGTATTAGATAATTTTGTTGTGACGCTACTCA
CTTGGATTGCAACCGTGATGTCCAATGTAGGTTATTAAAAGGTAGATTACTTCCGAATTG
CACCCAAGAGAGAGGTTAAGAATGTATGGTCACTTAAATAGGTATCGTTGTCCATAAACC
CAACAAAATCCACTGTTCTCTTCTGGATTTCTTTAGCCACCTGCAATTTTAATCCCATTT
TTATGGTAATGGGTAAACCATGTCTTGGTAAATATAAACCAAATACTATTAATTTAAAAC
TTTATGGAATTTGTAGGAAATTATGTTTTTTTGGTGACAAAGACTCATAGAAAGTCAAAA
TACATAGATAAAAGTATGGTTGTTTTTTTTTTTAACCAAAAATGTACCATTTTTTTCCAC
CAGACCCTAAAAAGATCTGGACAAACAGTGAAAGTTTGACAGTCCAAACATCTCTAGGAA
GTTTTTGTTTGATGTATTTTGCTTCTGGTCTATGCATACTGTGTTTTTTCATGTGGACTC
TTAAAATGGAAAATTTGTGGCAAATTGTTTATATGGAATATACCTATTAAATGAATCTCA
CTATCTTCCTTAACTTTGGTGTGTGTATGTGTGTGCACATGTTTTTCTTTAATGTGAATT
ACACAAAACACTTGTTGCTTTATACTGTCTTTTCTTATTGTTAGGGCTTTTGTGTATATG
ATCTGTTTCTAAAATAATTGCCTCAGGAATGCAGACCTTAATTTTTATATCTTTCCTAAA
CTAGCTAACATAATCATAGGCACTTAAGTATTTAGTGAATGGTGTAGGTAGAAATAGAAA
AAGATTTGCTTTTAATATATATTTGAGTATATATTTTAAAAGGAATGAAGCCAAAACCAA
AGCTTTAGTAAATTTTGATTTATTAGACATTTTAGGAAAATCATAGAATTCTGAATTTTT
AAAGAAAATCTGACTAATGAATTTATTTTTATTTTCAGATATATATGCATGCAGTGATAT
TTTATTTCATTGTTGACTTAGGACATGTCTGTATACAGTAATCAAATAAACTCACTATTA
AAGAAACTTACTACTGAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAAGAGAAATCTGGAGGGAGTTGGAAACCATCAAGTTTTTGAGGACACAAAGGGTGCAG
AAAAGATCGAGGAAAAGGGGTTAATCAGAGTTTCTCCCTATACCTGTCTTAGAAATAACA
GCATATTTTAATCAGAGATTTATGTTGCTATGAGGACAGATTCATCAAAAATGACGGATG
TGGAGCCTGTGGTCAACAATTTCGCATCATCAGCAAGGGCAGGCCGCCGGAATGCTCTAC
CAGACATCCAGGGTTCACCCACCACGGGTGGAACTTCGGAGCTGCCCCTCAAACTGGAAG
CCCTCTCCGTGAAGGAAGATGTGAAAAATAAAGATGAAGAAACAGCGCAAGACCAATCAG
AAAAGCCTGAAGATGAAGGAAAATGAAGGCTCATAACCTATCAAAAGTGCCGAATTTCTG
CACGTTAAAAGACTTAGTGGCTCTGCTTTCCTGAGATGTTTGATCTGGTAGTAACTATGG
TAACATTGCAGCCCTAAGCAACATTTATTGTATTAGATAATTTTGTTGTGACGCTACTCA
CTTGGATTGCAACCGTGATGTCCAATGTAGGTTATTAAAAGGTAGATTACTTCCGAATTG
CACCCAAGAGAGAGGTTAAGAATGTATGGTCACTTAAATAGGTATCGTTGTCCATAAACC
CAACAAAATCCACTGTTCTCTTCTGGATTTCTTTAGCCACCTGCAATTTTAATCCCATTT
TTATGGTAATGGGTAAACCATGTCTTGGTAAATATAAACCAAATACTATTAATTTAAAAC
TTTATGGAATTTGTAGGAAATTATGTTTTTTTGGTGACAAAGACTCATAGAAAGTCAAAA
TACATAGATAAAAGTATGGTTGTTTTTTTTTTTAACCAAAAATGTACCATTTTTTTCCAC
CAGACCCTAAAAAGATCTGGACAAACAGTGAAAGTTTGACAGTCCAAACATCTCTAGGAA
GTTTTTGTTTGATGTATTTTGCTTCTGGTCTATGCATACTGTGTTTTTTCATGTGGACTC
TTAAAATGGAAAATTTGTGGCAAATTGTTTATATGGAATATACCTATTAAATGAATCTCA
CTATCTTCCTTAACTTTGGTGTGTGTATGTGTGTGCACATGTTTTTCTTTAATGTGAATT
ACACAAAACACTTGTTGCTTTATACTGTCTTTTCTTATTGTTAGGGCTTTTGTGTATATG
ATCTGTTTCTAAAATAATTGCCTCAGGAATGCAGACCTTAATTTTTATATCTTTCCTAAA
CTAGCTAACATAATCATAGGCACTTAAGTATTTAGTGAATGGTGTAGGTAGAAATAGAAA
AAGATTTGCTTTTAATATATATTTGAGTATATATTTTAAAAGGAATGAAGCCAAAACCAA
AGCTTTAGTAAATTTTGATTTATTAGACATTTTAGGAAAATCATAGAATTCTGAATTTTT
AAAGAAAATCTGACTAATGAATTTATTTTTATTTTCAGATATATATGCATGCAGTGATAT
TTTATTTCATTGTTGACTTAGGACATGTCTGTATACAGTAATCAAATAAACTCACTATTA
AAGAAACTTACTACTGAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55959913|emb|CAI17094.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55959913|emb|CAI17094.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               317-435, - strand, RNAz p=0.89739
               

               
               868-987, - strand, RNAz p=0.509728

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               317-435, - strand, RNAz p=0.89739
               

               
               868-987, - strand, RNAz p=0.509728

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               317-1577, gnl|bosTau2|chr9 (14540706-14539453)
               

               
               317-1577, gnl|Hg17|chr6 (123087970-123089217)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               317-1577, gnl|bosTau2|chr9 (14540706-14539453)
               

               
               317-1577, gnl|Hg17|chr6 (123087970-123089217)

Expressed library(ies): 18 entry(ies)

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Expressed library(ies): 18 entry(ies)

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               ret (0.514933)
               

               
               elu (0.385356)
               

               
               cte (0.29274)
               

               
               tra (0.246184)
               

               
               tes (0.207814)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.514933)
               

               
               elu (0.385356)
               

               
               cte (0.29274)
               

               
               tra (0.246184)
               

               
               tes (0.207814)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)

	317-435, - strand, RNAz p=0.89739
	868-987, - strand, RNAz p=0.509728

	317-1577, gnl\|bosTau2\|chr9 (14540706-14539453)
	317-1577, gnl\|Hg17\|chr6 (123087970-123089217)

	ret (0.514933)
	elu (0.385356)
	cte (0.29274)
	tra (0.246184)
	tes (0.207814)
	fty (0.17584)
	sin (0.174948)
	cut (0.169924)
	nje (0.16592)
	fco (0.157208)
	liv (0.146284)
	lin (0.145603)
	spl (0.143184)
	pla (0.133672)
	nmm (0.132802)
	sug (0.127291)
	ebs (0.118301)
	jej (0.0989218)