Non-Coding RNA Search

Ss1.1-rjej21b_o4.5

Sequence:


               
               ATTTGATAATAAGAGGATAGTCAGTGGAGCCTATGATGGAAAAATTAAAGTGTGGGATCT
TATAGCTGCTTTGGATCCCCGTGCTCCTGCAGGAACTCTCTGTCTTCGGACCCTTGTGGA
GCATTCTGGAAGAGTTTTCCGGCTCCAGTTTGATGAATTCCAGATTGTCAGTAGTTCACA
TGATGACACAATCCTCATCTGGGACTTCCTAAATGATCCAGCTGCCCAAGCTGAACCCCC
CCGCTCCCCTTCTCGCACATACACCTATATCTCCAGATAGATAATCATACACTGACCTCA
GACTTGCCCAGGACTCATTAAAGTTGCGGTATTTAACGTATCTGCCAATACCAGGATGAG
CAACAACAGTAACAATCAAACTACTCCCCACTTTCCTCGGACTAGCCGGGGAGCGGGGCT
TTAAGACTCCTGTTGGGACACAGTTGGTCTGCAGTCGACCCGGGACGGTCTACTCAGCGC
AGCTGACTGCTTCCGTGCTGCTATCAGAAGATGTCTTTTATCTTTTGGGAATGATTGGAA
CTTTTAGACCTCACCTCACCTCCCCTCCCCTCCTTCTTTTCCCTCTGCACCTGTTTTTTC
TTCATTTGGTTCCAGACAAAGATGACTTATAAATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTGATAATAAGAGGATAGTCAGTGGAGCCTATGATGGAAAAATTAAAGTGTGGGATCT
TATAGCTGCTTTGGATCCCCGTGCTCCTGCAGGAACTCTCTGTCTTCGGACCCTTGTGGA
GCATTCTGGAAGAGTTTTCCGGCTCCAGTTTGATGAATTCCAGATTGTCAGTAGTTCACA
TGATGACACAATCCTCATCTGGGACTTCCTAAATGATCCAGCTGCCCAAGCTGAACCCCC
CCGCTCCCCTTCTCGCACATACACCTATATCTCCAGATAGATAATCATACACTGACCTCA
GACTTGCCCAGGACTCATTAAAGTTGCGGTATTTAACGTATCTGCCAATACCAGGATGAG
CAACAACAGTAACAATCAAACTACTCCCCACTTTCCTCGGACTAGCCGGGGAGCGGGGCT
TTAAGACTCCTGTTGGGACACAGTTGGTCTGCAGTCGACCCGGGACGGTCTACTCAGCGC
AGCTGACTGCTTCCGTGCTGCTATCAGAAGATGTCTTTTATCTTTTGGGAATGATTGGAA
CTTTTAGACCTCACCTCACCTCCCCTCCCCTCCTTCTTTTCCCTCTGCACCTGTTTTTTC
TTCATTTGGTTCCAGACAAAGATGACTTATAAATAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               99-218, + strand, RNAz p=0.81638

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               99-218, + strand, RNAz p=0.81638

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               99-312, gnl|bosTau2|chr26 (13908195-13908407)
               

               
               99-312, gnl|canFam2|chr1 (31086040-31086230)
               

               
               99-312, gnl|dasNov1|scaffold_1654 (56302-56485)
               

               
               99-312, gnl|echTel1|scaffold_314068 (117791-117658)
               

               
               99-312, gnl|Hg17|chr10 (103300427-103300639)
               

               
               99-312, gnl|hg17|chr6 (135688617-135688793)
               

               
               99-312, gnl|loxAfr1|scaffold_973 (44735-44919)
               

               
               99-312, gnl|mm7|chr19 (45424356-45424172)
               

               
               99-312, gnl|Mm7|chr19 (45424148-45424360)
               

               
               99-312, gnl|oryCun1|scaffold_154916 (4181-4355)
               

               
               99-312, gnl|panTro1|chr5 (138472193-138472369)
               

               
               99-312, gnl|rheMac2|chr4 (128512148-128511960)
               

               
               99-312, gnl|rn3|chr1 (250952537-250952353)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               99-312, gnl|bosTau2|chr26 (13908195-13908407)
               

               
               99-312, gnl|canFam2|chr1 (31086040-31086230)
               

               
               99-312, gnl|dasNov1|scaffold_1654 (56302-56485)
               

               
               99-312, gnl|echTel1|scaffold_314068 (117791-117658)
               

               
               99-312, gnl|Hg17|chr10 (103300427-103300639)
               

               
               99-312, gnl|hg17|chr6 (135688617-135688793)
               

               
               99-312, gnl|loxAfr1|scaffold_973 (44735-44919)
               

               
               99-312, gnl|mm7|chr19 (45424356-45424172)
               

               
               99-312, gnl|Mm7|chr19 (45424148-45424360)
               

               
               99-312, gnl|oryCun1|scaffold_154916 (4181-4355)
               

               
               99-312, gnl|panTro1|chr5 (138472193-138472369)
               

               
               99-312, gnl|rheMac2|chr4 (128512148-128511960)
               

               
               99-312, gnl|rn3|chr1 (250952537-250952353)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               eli (0.151814)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eli (0.151814)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	99-312, gnl\|bosTau2\|chr26 (13908195-13908407)
	99-312, gnl\|canFam2\|chr1 (31086040-31086230)
	99-312, gnl\|dasNov1\|scaffold_1654 (56302-56485)
	99-312, gnl\|echTel1\|scaffold_314068 (117791-117658)
	99-312, gnl\|Hg17\|chr10 (103300427-103300639)
	99-312, gnl\|hg17\|chr6 (135688617-135688793)
	99-312, gnl\|loxAfr1\|scaffold_973 (44735-44919)
	99-312, gnl\|mm7\|chr19 (45424356-45424172)
	99-312, gnl\|Mm7\|chr19 (45424148-45424360)
	99-312, gnl\|oryCun1\|scaffold_154916 (4181-4355)
	99-312, gnl\|panTro1\|chr5 (138472193-138472369)
	99-312, gnl\|rheMac2\|chr4 (128512148-128511960)
	99-312, gnl\|rn3\|chr1 (250952537-250952353)