Non-Coding RNA Search

Ss1.1-rjej22b_c24.5

Sequence:


               
               CAAGGAGCAGTTCTCCCCCACCCCAACCTCCCTGACCTCTCCAAAGCAATTCCTGATTAA
CCAAGGGCTTTGTCCATCTCATCTAGAGGGACACGGGGGTCCTCGTTGGCCCGGCTGGGA
CCATTCCACTGCCCCAGAATCCCAGGGGGGCCTGACAGCACCCACTTGACAGTAAGAGCT
CGCCTCCCTTGGCCGCCCTTCTCCTGCACCTCCCGGGCCCCAGAGTCTTCCCTGGATCTT
TCCCCCTCACTCTGCACTCGGCCTGCTCCTTCTGGCTCTCCTCCAAAGTGCCCCAGCCTT
CCCCCAAATTCCCTTTGGGTGTGACAGCATTGCCACAGAGCGGCTTCTGCGCTGGAGCTC
AACTCTCCTTTCCCAGGAGGAACTGTGGTGTCAGGGATCAGAGGTTTGGGGTCGTGGGGG
CAGTAGCTGGGGGCAAAGCCTGCTTCCTGATGCTTACCCTGCCTGTGTCCTCTCCACTGC
CAGCTCCAGCACGGAAACTGCCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGGAGCAGTTCTCCCCCACCCCAACCTCCCTGACCTCTCCAAAGCAATTCCTGATTAA
CCAAGGGCTTTGTCCATCTCATCTAGAGGGACACGGGGGTCCTCGTTGGCCCGGCTGGGA
CCATTCCACTGCCCCAGAATCCCAGGGGGGCCTGACAGCACCCACTTGACAGTAAGAGCT
CGCCTCCCTTGGCCGCCCTTCTCCTGCACCTCCCGGGCCCCAGAGTCTTCCCTGGATCTT
TCCCCCTCACTCTGCACTCGGCCTGCTCCTTCTGGCTCTCCTCCAAAGTGCCCCAGCCTT
CCCCCAAATTCCCTTTGGGTGTGACAGCATTGCCACAGAGCGGCTTCTGCGCTGGAGCTC
AACTCTCCTTTCCCAGGAGGAACTGTGGTGTCAGGGATCAGAGGTTTGGGGTCGTGGGGG
CAGTAGCTGGGGGCAAAGCCTGCTTCCTGATGCTTACCCTGCCTGTGTCCTCTCCACTGC
CAGCTCCAGCACGGAAACTGCCGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               158-273, - strand, RNAz p=0.583201

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               158-273, - strand, RNAz p=0.583201

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-502, gnl|bosTau2|chr23 (20859750-20859248)
               

               
               2-502, gnl|Hg17|chr6 (30717456-30717950)
               

               
               2-502, gnl|Mm7|chr17 (34006689-34006210)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-502, gnl|bosTau2|chr23 (20859750-20859248)
               

               
               2-502, gnl|Hg17|chr6 (30717456-30717950)
               

               
               2-502, gnl|Mm7|chr17 (34006689-34006210)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jej (0.197844)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.197844)

	2-502, gnl\|bosTau2\|chr23 (20859750-20859248)
	2-502, gnl\|Hg17\|chr6 (30717456-30717950)
	2-502, gnl\|Mm7\|chr17 (34006689-34006210)