Non-Coding RNA Search

Ss1.1-rjej22b_n10.5

Sequence:


               
               GACAAATATACATTAGGGAGTTTATCTTGCAAAGGAATTGCTTTCATCTGACATAGAAAA
TGTGTTTTATCAGACAAATGCTTTTATTTTCATTCTAGTAGTTTGATATGGAAGTTAGTA
AAGGAATTTTTTTTCTCACTTTATTTTCAGTAATTATTTTTAGTGTTTTAATGCACATTG
TGAGGCCCGCAGAAATGAACCTGTGGTACTGCAGTACCAGCTGGGAGACCTCTGATCCTG
ATTTAGTCCCAGTTCCTTTGTTACTCTTGGAGGCCAGGAGCCTTGTGAACACCGAGAGAA
ATTGGCAGCTCACAGACCCCTGTGCTCTGACATGGCTCTGACAGGCTGTTCAGCACTTAC
CGGCCTCAGGTTCCCCAGTGCACCAGGGCCGTGACAAATGGATTCCCCTGGAGGACCCAG
CAGCAGTCCCCAGGTTACCAACACTGATGTGACAAGTCTTCCTTCCTTATTCCTCCAACA
TGCAGTACCAAAAAAAGGGGAAAAAGGAGAAAATAAAGCCTTACTTTGTTTTACTTGCCA
TTGACTGTAAGGAAGCTTTAAAGCATTTTTAAGGAAATATTCAAAAGCAAGGTTGGAAAA
TGATCTTTCTATAGAAAGATACAGTATGTAACTGCAGGAAACCCACTGCCCCTTTGTATG
TTGTAGAACCCCAAAAGTGTGGGAATATTTGATGTTTTCAGCAAGAGAAAGAAGATATGG
TCCATATTAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACAAATATACATTAGGGAGTTTATCTTGCAAAGGAATTGCTTTCATCTGACATAGAAAA
TGTGTTTTATCAGACAAATGCTTTTATTTTCATTCTAGTAGTTTGATATGGAAGTTAGTA
AAGGAATTTTTTTTCTCACTTTATTTTCAGTAATTATTTTTAGTGTTTTAATGCACATTG
TGAGGCCCGCAGAAATGAACCTGTGGTACTGCAGTACCAGCTGGGAGACCTCTGATCCTG
ATTTAGTCCCAGTTCCTTTGTTACTCTTGGAGGCCAGGAGCCTTGTGAACACCGAGAGAA
ATTGGCAGCTCACAGACCCCTGTGCTCTGACATGGCTCTGACAGGCTGTTCAGCACTTAC
CGGCCTCAGGTTCCCCAGTGCACCAGGGCCGTGACAAATGGATTCCCCTGGAGGACCCAG
CAGCAGTCCCCAGGTTACCAACACTGATGTGACAAGTCTTCCTTCCTTATTCCTCCAACA
TGCAGTACCAAAAAAAGGGGAAAAAGGAGAAAATAAAGCCTTACTTTGTTTTACTTGCCA
TTGACTGTAAGGAAGCTTTAAAGCATTTTTAAGGAAATATTCAAAAGCAAGGTTGGAAAA
TGATCTTTCTATAGAAAGATACAGTATGTAACTGCAGGAAACCCACTGCCCCTTTGTATG
TTGTAGAACCCCAAAAGTGTGGGAATATTTGATGTTTTCAGCAAGAGAAAGAAGATATGG
TCCATATTAAAT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               199-318, - strand, RNAz p=0.964491
               

               
               602-714, + strand, RNAz p=0.700961

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               199-318, - strand, RNAz p=0.964491
               

               
               602-714, + strand, RNAz p=0.700961

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_016338, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_016338, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-732, gnl|bosTau2|chr23 (7486199-7485476)
               

               
               1-732, gnl|Hg17|chr5 (61959396-61960148)
               

               
               1-732, gnl|Mm7|chr13 (103925044-103924345)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-732, gnl|bosTau2|chr23 (7486199-7485476)
               

               
               1-732, gnl|Hg17|chr5 (61959396-61960148)
               

               
               1-732, gnl|Mm7|chr13 (103925044-103924345)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               tbr (0.308356)
               

               
               col (0.195008)
               

               
               ste (0.135208)
               

               
               clu (0.119646)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.308356)
               

               
               col (0.195008)
               

               
               ste (0.135208)
               

               
               clu (0.119646)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

	199-318, - strand, RNAz p=0.964491
	602-714, + strand, RNAz p=0.700961

	1-732, gnl\|bosTau2\|chr23 (7486199-7485476)
	1-732, gnl\|Hg17\|chr5 (61959396-61960148)
	1-732, gnl\|Mm7\|chr13 (103925044-103924345)

	tbr (0.308356)
	col (0.195008)
	ste (0.135208)
	clu (0.119646)
	ecc (0.115035)
	jej (0.0989218)