Ss1.1-rjej23b_b10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGATTCTGCCTGTCCAAGCCCGGTGTGTACAAGGTGACCCCTCGCTCCTGCCACCGGTT CGAGCAAGCGTTCTACACCTATGACACGTCTTCACCCAGTATCTTGACGCTGACAGCCAT TCGCCACCATGTCCTTGGAACCATCACCACTGACAAAATGATGGATGTCACAGTGACCAT CAAATCTTCCATCGACAGTGAACCCGCCCTGGTCCTGGGCCCTCTGAAGTCCGTGCAGGA GCTGCGGAGGGAGCAGCAGCTGGCGGAGATCGAGAGCCGCAGGCAGGAGAGGGAGAAGAA CGGCGGAGAGGAAGGAGGCGAGGGAGGCACCAAGCCCCCCGTGCAGGAGATGGTGGATGA ATTACAGGGTCCCTTCTCCTACGACTTCTCCTACTGGGCACGGTCTGGAGAGAAAATCAC TGTCACACCCTCCTCTAAAGAGCTACTGTTTTATCCACCTTCCATGGAAGCTACCGTCAG TGGAGAAAGCTGCCCAGGGAAGCTGATCGAGATCCAGGGGAAAGCTGGCTTGTTTCTAGA AGGCCAGATCCACCCAGAGCTGGAGGGAGTGGAGATTGTCATCAGTGAGAAGGGGGCGAG TTCACCCCTGATCACAGTCTTTACCGACGACAAAGGTGCCTACAGCGTTGGGCCGCTGCA CAGTGACCTGGAGTACACCGTGTCATCACAGAAGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGATTCTGCCTGTCCAAGCCCGGTGTGTACAAGGTGACCCCTCGCTCCTGCCACCGGTT CGAGCAAGCGTTCTACACCTATGACACGTCTTCACCCAGTATCTTGACGCTGACAGCCAT TCGCCACCATGTCCTTGGAACCATCACCACTGACAAAATGATGGATGTCACAGTGACCAT CAAATCTTCCATCGACAGTGAACCCGCCCTGGTCCTGGGCCCTCTGAAGTCCGTGCAGGA GCTGCGGAGGGAGCAGCAGCTGGCGGAGATCGAGAGCCGCAGGCAGGAGAGGGAGAAGAA CGGCGGAGAGGAAGGAGGCGAGGGAGGCACCAAGCCCCCCGTGCAGGAGATGGTGGATGA ATTACAGGGTCCCTTCTCCTACGACTTCTCCTACTGGGCACGGTCTGGAGAGAAAATCAC TGTCACACCCTCCTCTAAAGAGCTACTGTTTTATCCACCTTCCATGGAAGCTACCGTCAG TGGAGAAAGCTGCCCAGGGAAGCTGATCGAGATCCAGGGGAAAGCTGGCTTGTTTCTAGA AGGCCAGATCCACCCAGAGCTGGAGGGAGTGGAGATTGTCATCAGTGAGAAGGGGGCGAG TTCACCCCTGATCACAGTCTTTACCGACGACAAAGGTGCCTACAGCGTTGGGCCGCTGCA CAGTGACCTGGAGTACACCGTGTCATCACAGAAGGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 185-303, + strand, RNAz p=0.695481 | |
| 519-645, + strand, RNAz p=0.897129 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 185-303, + strand, RNAz p=0.695481 | |
| 519-645, + strand, RNAz p=0.897129 |
| Homologous human UTR: 2 entry(ies) | More info |
| Homologous human UTR: 2 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC041131, + | |
| 3' of BC041131, + |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 185-404, gnl|bosTau2|chr25 (16339839-16339620) | |
| 185-404, gnl|canFam2|chr6 (30789359-30789198) | |
| 185-404, gnl|danRer3|chrNA (194518979-194519122) | |
| 185-404, gnl|dasNov1|scaffold_11215 (16895-17056) | |
| 185-404, gnl|echTel1|scaffold_293385 (36380-36541) | |
| 185-404, gnl|fr1|chrUn (84562813-84562657) | |
| 185-404, gnl|galGal2|chr14 (9788796-9788943) | |
| 185-404, gnl|hg17|chr16 (14876384-14876545) | |
| 185-404, gnl|Hg17|chr16 (18439805-18439586) | |
| 185-404, gnl|mm7|chr7 (42242386-42242547) | |
| 185-404, gnl|Mm7|chr7 (42242397-42242616) | |
| 185-404, gnl|monDom2|scaffold_19 (36262151-36262303) | |
| 185-404, gnl|panTro1|chr18_random (6954116-6953955) | |
| 185-404, gnl|rheMac2|chr20 (15992635-15992796) | |
| 185-404, gnl|rn3|chr1 (96641401-96641562) | |
| 185-404, gnl|tetNig1|chr18 (4741598-4741453) | |
| 185-404, gnl|xenTro1|scaffold_214 (263721-263876) | |
| 480-645, gnl|bosTau2|chr25 (16338612-16338447) | |
| 480-645, gnl|canFam2|chr6 (30787934-30787747) | |
| 480-645, gnl|dasNov1|scaffold_11215 (18061-18250) | |
| 480-645, gnl|echTel1|scaffold_293385 (37750-37939) | |
| 480-645, gnl|fr1|chrUn (84562327-84562150) | |
| 480-645, gnl|galGal2|chr14 (9790112-9790308) | |
| 480-645, gnl|hg17|chr16 (14877690-14877879) | |
| 480-645, gnl|Hg17|chr16 (18438489-18438324) | |
| 480-645, gnl|loxAfr1|scaffold_14913 (644-829) | |
| 480-645, gnl|mm7|chr7 (42244586-42244775) | |
| 480-645, gnl|Mm7|chr7 (42244607-42244772) | |
| 480-645, gnl|monDom2|scaffold_19 (36263027-36263215) | |
| 480-645, gnl|panTro1|chr18 (18868308-18868119) | |
| 480-645, gnl|rheMac2|chr20 (15993896-15994085) | |
| 480-645, gnl|rn3|chr1 (96643173-96643360) | |
| 480-645, gnl|tetNig1|chr18 (4741101-4740928) | |
| 480-645, gnl|xenTro1|scaffold_214 (267543-267719) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 185-404, gnl|bosTau2|chr25 (16339839-16339620) | |
| 185-404, gnl|canFam2|chr6 (30789359-30789198) | |
| 185-404, gnl|danRer3|chrNA (194518979-194519122) | |
| 185-404, gnl|dasNov1|scaffold_11215 (16895-17056) | |
| 185-404, gnl|echTel1|scaffold_293385 (36380-36541) | |
| 185-404, gnl|fr1|chrUn (84562813-84562657) | |
| 185-404, gnl|galGal2|chr14 (9788796-9788943) | |
| 185-404, gnl|hg17|chr16 (14876384-14876545) | |
| 185-404, gnl|Hg17|chr16 (18439805-18439586) | |
| 185-404, gnl|mm7|chr7 (42242386-42242547) | |
| 185-404, gnl|Mm7|chr7 (42242397-42242616) | |
| 185-404, gnl|monDom2|scaffold_19 (36262151-36262303) | |
| 185-404, gnl|panTro1|chr18_random (6954116-6953955) | |
| 185-404, gnl|rheMac2|chr20 (15992635-15992796) | |
| 185-404, gnl|rn3|chr1 (96641401-96641562) | |
| 185-404, gnl|tetNig1|chr18 (4741598-4741453) | |
| 185-404, gnl|xenTro1|scaffold_214 (263721-263876) | |
| 480-645, gnl|bosTau2|chr25 (16338612-16338447) | |
| 480-645, gnl|canFam2|chr6 (30787934-30787747) | |
| 480-645, gnl|dasNov1|scaffold_11215 (18061-18250) | |
| 480-645, gnl|echTel1|scaffold_293385 (37750-37939) | |
| 480-645, gnl|fr1|chrUn (84562327-84562150) | |
| 480-645, gnl|galGal2|chr14 (9790112-9790308) | |
| 480-645, gnl|hg17|chr16 (14877690-14877879) | |
| 480-645, gnl|Hg17|chr16 (18438489-18438324) | |
| 480-645, gnl|loxAfr1|scaffold_14913 (644-829) | |
| 480-645, gnl|mm7|chr7 (42244586-42244775) | |
| 480-645, gnl|Mm7|chr7 (42244607-42244772) | |
| 480-645, gnl|monDom2|scaffold_19 (36263027-36263215) | |
| 480-645, gnl|panTro1|chr18 (18868308-18868119) | |
| 480-645, gnl|rheMac2|chr20 (15993896-15994085) | |
| 480-645, gnl|rn3|chr1 (96643173-96643360) | |
| 480-645, gnl|tetNig1|chr18 (4741101-4740928) | |
| 480-645, gnl|xenTro1|scaffold_214 (267543-267719) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jej (0.197844) | |
| eru (0.120048) |