Non-Coding RNA Search

Ss1.1-rjej23b_c19.5

Sequence:


               
               CCGGGGCAGCCAAAGCCTTGATGACCTCCTGGACCGGCCGGGTAACTCCACAGCACCCTC
CGAGTACTGGGATGGCCAGTCCCGCTCCCGAACCCCCAGCGGGGTCCCGAGCCGCACCCC
CAGCCCCGTACCTACACCCCTGCCTGGCAGCCGCCGAGGTAGCATGGGCAGCATGGGGGC
GGCCAGTGATGGCAAGAAACTTACGTCCTGGGAGCAGCAACCCCCAGAGCTCTTCCCTCG
GGGCACGAACCCCTTCGCCACCGTAAAGCTGCGTCCCACTGTCACCAACGACCGCTCAGC
GCCCCTTATCCGCTGAGGCGCCATCCTCCACCAGGGGTCTGAGGTCGTCTCCTGCACACC
TGCCCAAGGGCTGCCCAGAGCTGGCGGCAGCAGAAGCAGCAGCAGTGGATCCAAGAAGCC
AGGGCCCCGATCCGGGAGGTGGCTGCCCTTCCACAAACCACGCCCCGGCCTGAGAAGTTC
CAAGGGCGCTGGCCTGGGGTCTGGGGCCTTCCAAATAAAGCAGGTGGAATTGGGGGACAG
AGCCATTTCTCCCCACTCCAAGGAGCCCCAGACTCTCCCTGGGGGGCCCACCTCGTGTCC
CCCACCCTCTTTCCTCCTTCTGTGTCCCAGTGGGGAGGAGTCCCTTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGGGCAGCCAAAGCCTTGATGACCTCCTGGACCGGCCGGGTAACTCCACAGCACCCTC
CGAGTACTGGGATGGCCAGTCCCGCTCCCGAACCCCCAGCGGGGTCCCGAGCCGCACCCC
CAGCCCCGTACCTACACCCCTGCCTGGCAGCCGCCGAGGTAGCATGGGCAGCATGGGGGC
GGCCAGTGATGGCAAGAAACTTACGTCCTGGGAGCAGCAACCCCCAGAGCTCTTCCCTCG
GGGCACGAACCCCTTCGCCACCGTAAAGCTGCGTCCCACTGTCACCAACGACCGCTCAGC
GCCCCTTATCCGCTGAGGCGCCATCCTCCACCAGGGGTCTGAGGTCGTCTCCTGCACACC
TGCCCAAGGGCTGCCCAGAGCTGGCGGCAGCAGAAGCAGCAGCAGTGGATCCAAGAAGCC
AGGGCCCCGATCCGGGAGGTGGCTGCCCTTCCACAAACCACGCCCCGGCCTGAGAAGTTC
CAAGGGCGCTGGCCTGGGGTCTGGGGCCTTCCAAATAAAGCAGGTGGAATTGGGGGACAG
AGCCATTTCTCCCCACTCCAAGGAGCCCCAGACTCTCCCTGGGGGGCCCACCTCGTGTCC
CCCACCCTCTTTCCTCCTTCTGTGTCCCAGTGGGGAGGAGTCCCTTAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               507-646, - strand, RNAz p=0.999904

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               507-646, - strand, RNAz p=0.999904

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               535-629, + strand, RNAmicro p=0.937859

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               535-629, + strand, RNAmicro p=0.937859

Similar Transcript(s): 2 entry(ies)

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Similar Transcript(s): 2 entry(ies)

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               507-646, BP420720 Homo sapiens small intestine Homo sapiens cDNA clone 
(dbj|BP420720.1|), blast E-value=0.0000000000006, identity=84.4% 
               

               
               507-646, ne53h01.x5 NCI_CGAP_Co3 Homo sapiens cDNA clone IMAGE (gb|AI732208.1|), 
blast E-value=0.0000000000006, identity=84.4%

Similar Transcript(s): 2 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               507-646, BP420720 Homo sapiens small intestine Homo sapiens cDNA clone 
(dbj|BP420720.1|), blast E-value=0.0000000000006, identity=84.4% 
               

               
               507-646, ne53h01.x5 NCI_CGAP_Co3 Homo sapiens cDNA clone IMAGE (gb|AI732208.1|), 
blast E-value=0.0000000000006, identity=84.4%

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-196, gnl|bosTau2|chr5 (66911900-66912095)
               

               
               1-196, gnl|Hg17|chr22 (36806944-36806749)
               

               
               1-196, gnl|Mm7|chr15 (79342335-79342140)
               


               
               240-646, gnl|bosTau2|chr5 (66912809-66913214)
               

               
               240-646, gnl|Hg17|chr22 (36805883-36805485)
               

               
               240-646, gnl|Mm7|chr15 (79341605-79341228)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-196, gnl|bosTau2|chr5 (66911900-66912095)
               

               
               1-196, gnl|Hg17|chr22 (36806944-36806749)
               

               
               1-196, gnl|Mm7|chr15 (79342335-79342140)
               


               
               240-646, gnl|bosTau2|chr5 (66912809-66913214)
               

               
               240-646, gnl|Hg17|chr22 (36805883-36805485)
               

               
               240-646, gnl|Mm7|chr15 (79341605-79341228)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nco (0.161734)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	507-646, BP420720 Homo sapiens small intestine Homo sapiens cDNA clone (dbj\|BP420720.1\|), blast E-value=0.0000000000006, identity=84.4%
	507-646, ne53h01.x5 NCI_CGAP_Co3 Homo sapiens cDNA clone IMAGE (gb\|AI732208.1\|), blast E-value=0.0000000000006, identity=84.4%

	1-196, gnl\|bosTau2\|chr5 (66911900-66912095)
	1-196, gnl\|Hg17\|chr22 (36806944-36806749)
	1-196, gnl\|Mm7\|chr15 (79342335-79342140)

	240-646, gnl\|bosTau2\|chr5 (66912809-66913214)
	240-646, gnl\|Hg17\|chr22 (36805883-36805485)
	240-646, gnl\|Mm7\|chr15 (79341605-79341228)