Non-Coding RNA Search

Ss1.1-rjej25b_h19.5

Sequence:


               
               GCGGGGAGGTGAGGGATGAGGCCGGCACCCCCGCCCCCGGCCCCGTCCCGTTCTCAGAAA
ACCAAAGGAGGGGCTTGGGAACGTGGACTCTGGAGCTTGATGTGTGAGGGAATCGGAGTT
CTGCTTCTGATTCTGCCACCGGCCAGCGCTGGGAATTCAGTCAAGTGACCTAATGCCGCG
AGTTCCTGGTTCCTCGTCGTCCGGGGGGATCACGATCCTGCCCGTCCTACCTCATGGGGC
CGCAAGAACCGGTGACCTAGGGGAGGTGACCGCTGTTAACGAGCAGGTGCAGGTGTTGCT
GCTGAAAGCTGGGGCGCTTTGGAGAACCCAGGACCCGGATGGCTGGTGAGGCCCTCAAGG
CGGAGGGGGAGGGGGAGACGCGGGGGCAAAGCAGCCTCTGCCAGGGCGCCTCAGGAGAAA
CCCAGCAAAGGCATCCTGTCCTCATGCCAAGGGACCAACAGCAGTGGCTCAGGGTTATTT
TCCTTGAGGTGCCACTCCCTCGAGGTCGCTAATTTGGGAGGGAATTGAGCATGGCATGGG
GAGGGAGATGGGTGGGTCTTCCCAGAACCTTCTCTGCATCAGAATCTGTGCCCCTGTGCT
GTCTGGGAGGGGCCCCCATTTCTTGGCGGTGCGAAGGGACCTGGGGCGATAGGCTACCTT
CTGCATGGGCGTCCCATGGCTTGGACACTCAGGCACTGTTGGCAGAGGCAGGGTGGCTGA
GTTCCCTGGCCAGCTCTCGGCATCTCCAGCCTCTGCCCCCCGCCCACCCGTGCCCCTGTG
CCCCTGCTCCTGCTATAACTAGCTTCACCGCCTGTGTATCCCCTCCTGCCCTCCCCCCAG
TGCTGCGACCATTCCAAGGTACAGACTTAGATGTTAAAAGATGTTCCTGGCACTTCTGGA
ACTGACTCAAACAACAACGTTTGTTTTAAATGCTATGATTTATATTTATATGTAGAAAGA
TTTCTGGACCACTTAAGCTCTTTGAGCAAAATCAGGAGCATCTGGGGATTTGTTAAATTA
TGTAAGAAGATGGCACAGATATCAAGATATTATTGTGTAAAAACAATGCTTTTACTCTGA
TCTAATTTCACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGGGAGGTGAGGGATGAGGCCGGCACCCCCGCCCCCGGCCCCGTCCCGTTCTCAGAAA
ACCAAAGGAGGGGCTTGGGAACGTGGACTCTGGAGCTTGATGTGTGAGGGAATCGGAGTT
CTGCTTCTGATTCTGCCACCGGCCAGCGCTGGGAATTCAGTCAAGTGACCTAATGCCGCG
AGTTCCTGGTTCCTCGTCGTCCGGGGGGATCACGATCCTGCCCGTCCTACCTCATGGGGC
CGCAAGAACCGGTGACCTAGGGGAGGTGACCGCTGTTAACGAGCAGGTGCAGGTGTTGCT
GCTGAAAGCTGGGGCGCTTTGGAGAACCCAGGACCCGGATGGCTGGTGAGGCCCTCAAGG
CGGAGGGGGAGGGGGAGACGCGGGGGCAAAGCAGCCTCTGCCAGGGCGCCTCAGGAGAAA
CCCAGCAAAGGCATCCTGTCCTCATGCCAAGGGACCAACAGCAGTGGCTCAGGGTTATTT
TCCTTGAGGTGCCACTCCCTCGAGGTCGCTAATTTGGGAGGGAATTGAGCATGGCATGGG
GAGGGAGATGGGTGGGTCTTCCCAGAACCTTCTCTGCATCAGAATCTGTGCCCCTGTGCT
GTCTGGGAGGGGCCCCCATTTCTTGGCGGTGCGAAGGGACCTGGGGCGATAGGCTACCTT
CTGCATGGGCGTCCCATGGCTTGGACACTCAGGCACTGTTGGCAGAGGCAGGGTGGCTGA
GTTCCCTGGCCAGCTCTCGGCATCTCCAGCCTCTGCCCCCCGCCCACCCGTGCCCCTGTG
CCCCTGCTCCTGCTATAACTAGCTTCACCGCCTGTGTATCCCCTCCTGCCCTCCCCCCAG
TGCTGCGACCATTCCAAGGTACAGACTTAGATGTTAAAAGATGTTCCTGGCACTTCTGGA
ACTGACTCAAACAACAACGTTTGTTTTAAATGCTATGATTTATATTTATATGTAGAAAGA
TTTCTGGACCACTTAAGCTCTTTGAGCAAAATCAGGAGCATCTGGGGATTTGTTAAATTA
TGTAAGAAGATGGCACAGATATCAAGATATTATTGTGTAAAAACAATGCTTTTACTCTGA
TCTAATTTCACT

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               3-471, gnl|bosTau2|chr7 (39425366-39425843)
               

               
               3-471, gnl|Hg17|chr5 (150155393-150155855)
               


               
               819-1090, gnl|bosTau2|chr7 (39425909-39426185)
               

               
               819-1090, gnl|Hg17|chr5 (150156181-150156448)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-471, gnl|bosTau2|chr7 (39425366-39425843)
               

               
               3-471, gnl|Hg17|chr5 (150155393-150155855)
               


               
               819-1090, gnl|bosTau2|chr7 (39425909-39426185)
               

               
               819-1090, gnl|Hg17|chr5 (150156181-150156448)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               duo (0.172801)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               pla (0.133672)
               

               
               med (0.116252)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               pla (0.133672)
               

               
               med (0.116252)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	3-471, gnl\|bosTau2\|chr7 (39425366-39425843)
	3-471, gnl\|Hg17\|chr5 (150155393-150155855)

	819-1090, gnl\|bosTau2\|chr7 (39425909-39426185)
	819-1090, gnl\|Hg17\|chr5 (150156181-150156448)

	duo (0.172801)
	nje (0.16592)
	nco (0.161734)
	pla (0.133672)
	med (0.116252)
	jej (0.0989218)
	eje (0.0988338)