Non-Coding RNA Search

Ss1.1-rjej26b_e17.5

Sequence:


               
               GTTGGCCTACTGGGCAGACGAACCCGTCCCCCCACAGGACGGCAGTGGCTCCTTGCGGCG
CAGCGGCTCCTTCGGGAAGCTCCGAGATGCCCTGAGGCGCAGCAGCGAGATGCTGGTGAA
GAAGCTCCAGGGTGGTGGCCCCCAGGAGCCCCCAAACCCCAGGATGAAGCGGGCCAGTTC
CCTCAACTTCCTCAACAAGAGTGTGGAGGAGCCAGTCCAGCCCGGAGGCACAGGCCTCTC
CGATAGCCGCACCCTCAGCTCCAGCTCCATGGACCTTTCCCGACGAAGCTCCCTCGTGGG
CTAATCCTGAAGGGGCAGCCGGCCGCCAGAGCCTCCACCCAGCACTGTCCCCACCCCAGC
CCTGAGCATGGGCCTGCTGCTTGCCCCTCCTGTCTCTCCCAAGGACCCCTGTCTTTTCTG
TTCAATCTCAGGGTAATCTCCCCCCTTGTCATCTCAGCCGGAGCCCTGGAGGCTGGGCCC
GCCCCTCCAACTCTTCCCCTTATTTATTCCTTCCAGCAGGGCCCTTCCCCCCGAGGTTCA
GGGTCCGCGGGAGGGGCTGGCCGGGGTCTCTCCTGCACACCCGCAGCCAAGAACACTAAG
CACCTGGCCTCCCTTCAGCGTCCCTGTCCTCCCCCGGCCGTTGCTTCTGTATATAGAGAA
ATAAGTTATTGGCCGCACCACTCCCCTCAGTCCTCGGTACTACCTGGCCTCCCCTCCCCA
CCCTTCTCTAGTGGTACCGCCCAGGCCTTAATCATCCCCATTCCGCGCGGTGGTATCTCC
CAGGCTCCACATCTCAGGGGCGGTGCCTCCGCAAAAGGGTTCCCTGGGCCGTCTCGCGTT
CCTCCCTGCCTCCGAAGGGCGCGTCCCGCCCCGCCAACGCCCCTAACCCCAGGGCCGGGA
GCCCGCCCCTTGCCCGTCCTCTCAGCGCCGGGCTCTGCCCTGCAGCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGGCCTACTGGGCAGACGAACCCGTCCCCCCACAGGACGGCAGTGGCTCCTTGCGGCG
CAGCGGCTCCTTCGGGAAGCTCCGAGATGCCCTGAGGCGCAGCAGCGAGATGCTGGTGAA
GAAGCTCCAGGGTGGTGGCCCCCAGGAGCCCCCAAACCCCAGGATGAAGCGGGCCAGTTC
CCTCAACTTCCTCAACAAGAGTGTGGAGGAGCCAGTCCAGCCCGGAGGCACAGGCCTCTC
CGATAGCCGCACCCTCAGCTCCAGCTCCATGGACCTTTCCCGACGAAGCTCCCTCGTGGG
CTAATCCTGAAGGGGCAGCCGGCCGCCAGAGCCTCCACCCAGCACTGTCCCCACCCCAGC
CCTGAGCATGGGCCTGCTGCTTGCCCCTCCTGTCTCTCCCAAGGACCCCTGTCTTTTCTG
TTCAATCTCAGGGTAATCTCCCCCCTTGTCATCTCAGCCGGAGCCCTGGAGGCTGGGCCC
GCCCCTCCAACTCTTCCCCTTATTTATTCCTTCCAGCAGGGCCCTTCCCCCCGAGGTTCA
GGGTCCGCGGGAGGGGCTGGCCGGGGTCTCTCCTGCACACCCGCAGCCAAGAACACTAAG
CACCTGGCCTCCCTTCAGCGTCCCTGTCCTCCCCCGGCCGTTGCTTCTGTATATAGAGAA
ATAAGTTATTGGCCGCACCACTCCCCTCAGTCCTCGGTACTACCTGGCCTCCCCTCCCCA
CCCTTCTCTAGTGGTACCGCCCAGGCCTTAATCATCCCCATTCCGCGCGGTGGTATCTCC
CAGGCTCCACATCTCAGGGGCGGTGCCTCCGCAAAAGGGTTCCCTGGGCCGTCTCGCGTT
CCTCCCTGCCTCCGAAGGGCGCGTCCCGCCCCGCCAACGCCCCTAACCCCAGGGCCGGGA
GCCCGCCCCTTGCCCGTCCTCTCAGCGCCGGGCTCTGCCCTGCAGCCC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               218-336, - strand, RNAz p=0.776893
               

               
               415-530, - strand, RNAz p=0.790278

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               218-336, - strand, RNAz p=0.776893
               

               
               415-530, - strand, RNAz p=0.790278

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               220-360, - strand, RNAmicro p=0.995211

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               220-360, - strand, RNAmicro p=0.995211

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               16-163, gnl|bosTau2|chr29 (39869477-39869628)
               

               
               16-163, gnl|Hg17|chr11 (65790118-65790265)
               

               
               16-163, gnl|Mm7|chr19 (5004256-5004106)
               


               
               218-570, gnl|bosTau2|chr29 (39870221-39870572)
               

               
               218-570, gnl|Hg17|chr11 (65790917-65791269)
               

               
               218-570, gnl|Mm7|chr19 (5003497-5003159)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-163, gnl|bosTau2|chr29 (39869477-39869628)
               

               
               16-163, gnl|Hg17|chr11 (65790118-65790265)
               

               
               16-163, gnl|Mm7|chr19 (5004256-5004106)
               


               
               218-570, gnl|bosTau2|chr29 (39870221-39870572)
               

               
               218-570, gnl|Hg17|chr11 (65790917-65791269)
               

               
               218-570, gnl|Mm7|chr19 (5003497-5003159)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jej (0.0989218)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.0989218)

	218-336, - strand, RNAz p=0.776893
	415-530, - strand, RNAz p=0.790278

	16-163, gnl\|bosTau2\|chr29 (39869477-39869628)
	16-163, gnl\|Hg17\|chr11 (65790118-65790265)
	16-163, gnl\|Mm7\|chr19 (5004256-5004106)

	218-570, gnl\|bosTau2\|chr29 (39870221-39870572)
	218-570, gnl\|Hg17\|chr11 (65790917-65791269)
	218-570, gnl\|Mm7\|chr19 (5003497-5003159)