Non-Coding RNA Search

Ss1.1-rjej26b_g16.5

Sequence:


               
               GGAAGCTCTGGTTGATCTGGGAGAGGAGTTTTCTGGAAGAGGCCATTTCCCAGTGGCCGA
AAAAACTCACAAAGGACTTGGAATCATCTTCAGCAATGGAAAGAAATGGAAGGAAATCCG
GCGCTTCTCCCTCATGACCTTGCGGAATTTAGGGATGGGGAAAAGGAGCATTGAGGATCG
CATTCAGGAGGAAGCCTGCTGCCTTGTGGAGGAGTTAAGAAAAACCAATGCCTCACCCTG
TGATCCCACTTTTATCCTGGACTGTGCTCCCTGCAATGTGATCTGCTCCATTATTTTCCA
AAATCGTTTTGATTATACAGATCAGGATTTTCTTACCTTGTTGGAAAAATTCCATGAAAA
CCTCAATATTCTGAGCTCTCCATGGATCCAGGTCTGTAATAACTTCCCTGCTCTCATTGA
TTATTCTCCAGGAATTCATAACAAATTACTTAAAAATATTGCTTATTTGAAAAGTTATGT
TTTGAAGAAAGTAAAAGAACACCAAGAATCACTGGACATTAACAATCCTCGGGACTTCAT
TGACTGTTTCCTGATCAAAATGGAACAGGAAAAGCACAATCAACAGTCTGAATATACAAT
TGAAAACTTGATAGCCACTGTATCTGATATGTTTTCTGCTGGTACAGAGACAACAAGCAC
CACCATGAGATATGGACTCCTGCTTCTACTGAAGCACCCAGAGGTCACAGCTAAGGTCCA
GGAAGAGATTGACCGTGTGATTGGCAGGCACCGGAGTGCCTGCATGCAGGACAGGAGCCA
CATGCCCTACACAGATGCTGTGGTACACGAGATCCAGAGATACATTGACCTGGTCCCCAA
CAACCTGCCCCATGCTGTGACTTGTGACATTAAATTCAGAAACTACCTCATCCCCAAGGG
CACAACAATATTAACATCTTTGACTTCTGTGCTGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAGCTCTGGTTGATCTGGGAGAGGAGTTTTCTGGAAGAGGCCATTTCCCAGTGGCCGA
AAAAACTCACAAAGGACTTGGAATCATCTTCAGCAATGGAAAGAAATGGAAGGAAATCCG
GCGCTTCTCCCTCATGACCTTGCGGAATTTAGGGATGGGGAAAAGGAGCATTGAGGATCG
CATTCAGGAGGAAGCCTGCTGCCTTGTGGAGGAGTTAAGAAAAACCAATGCCTCACCCTG
TGATCCCACTTTTATCCTGGACTGTGCTCCCTGCAATGTGATCTGCTCCATTATTTTCCA
AAATCGTTTTGATTATACAGATCAGGATTTTCTTACCTTGTTGGAAAAATTCCATGAAAA
CCTCAATATTCTGAGCTCTCCATGGATCCAGGTCTGTAATAACTTCCCTGCTCTCATTGA
TTATTCTCCAGGAATTCATAACAAATTACTTAAAAATATTGCTTATTTGAAAAGTTATGT
TTTGAAGAAAGTAAAAGAACACCAAGAATCACTGGACATTAACAATCCTCGGGACTTCAT
TGACTGTTTCCTGATCAAAATGGAACAGGAAAAGCACAATCAACAGTCTGAATATACAAT
TGAAAACTTGATAGCCACTGTATCTGATATGTTTTCTGCTGGTACAGAGACAACAAGCAC
CACCATGAGATATGGACTCCTGCTTCTACTGAAGCACCCAGAGGTCACAGCTAAGGTCCA
GGAAGAGATTGACCGTGTGATTGGCAGGCACCGGAGTGCCTGCATGCAGGACAGGAGCCA
CATGCCCTACACAGATGCTGTGGTACACGAGATCCAGAGATACATTGACCTGGTCCCCAA
CAACCTGCCCCATGCTGTGACTTGTGACATTAAATTCAGAAACTACCTCATCCCCAAGGG
CACAACAATATTAACATCTTTGACTTCTGTGCTGTA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q5S8C4_PIG

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q5S8C4_PIG

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               80-230, gnl|bosTau2|chr26 (9094547-9094397)
               

               
               80-230, gnl|Hg17|chr10 (96437871-96438021)
               

               
               80-230, gnl|Mm7|chr19 (38838909-38839059)
               


               
               387-573, gnl|bosTau2|chr26 (9085826-9085640)
               

               
               387-573, gnl|Hg17|chr10 (96456526-96456712)
               

               
               387-573, gnl|Mm7|chr19 (38842661-38842847)
               


               
               708-899, gnl|bosTau2|chr18 (45943295-45943104)
               

               
               708-899, gnl|Hg17|chr19 (46250212-46250021)
               

               
               708-899, gnl|Mm7|chr7 (23716292-23716483)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               80-230, gnl|bosTau2|chr26 (9094547-9094397)
               

               
               80-230, gnl|Hg17|chr10 (96437871-96438021)
               

               
               80-230, gnl|Mm7|chr19 (38838909-38839059)
               


               
               387-573, gnl|bosTau2|chr26 (9085826-9085640)
               

               
               387-573, gnl|Hg17|chr10 (96456526-96456712)
               

               
               387-573, gnl|Mm7|chr19 (38842661-38842847)
               


               
               708-899, gnl|bosTau2|chr18 (45943295-45943104)
               

               
               708-899, gnl|Hg17|chr19 (46250212-46250021)
               

               
               708-899, gnl|Mm7|chr7 (23716292-23716483)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               jej (0.296765)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.296765)

	80-230, gnl\|bosTau2\|chr26 (9094547-9094397)
	80-230, gnl\|Hg17\|chr10 (96437871-96438021)
	80-230, gnl\|Mm7\|chr19 (38838909-38839059)

	387-573, gnl\|bosTau2\|chr26 (9085826-9085640)
	387-573, gnl\|Hg17\|chr10 (96456526-96456712)
	387-573, gnl\|Mm7\|chr19 (38842661-38842847)

	708-899, gnl\|bosTau2\|chr18 (45943295-45943104)
	708-899, gnl\|Hg17\|chr19 (46250212-46250021)
	708-899, gnl\|Mm7\|chr7 (23716292-23716483)