Non-Coding RNA Search

Ss1.1-rjej26b_j11.5

Sequence:


               
               TTAGTGCGCCGCGCGCGGGGTGAGTGCGGCGCCAAAACCGCGCCCGTCGGGGACTCTGTT
CCAGGCCGGCTCTGCAGGGCAAGCCCAGCCGCAGCCCCCATTTCGCCAAACACAAGAGGA
GCTCAGAACCACCTCGCCTGCCGTCCTTCCGCCGCGGGGCCTGAAGGGGCAGTGGGGGTC
GGGGACTTGGGGCCCAAAAGATGCGGGGACCGGGCGGGCCGTCCCCCCTCAGGGCTCGTG
AAGGGACTCTGCCCACTCCCCCGAGACACCTCCAGGAAGAGGAAGGCATGGCTTCCGGGC
TTCCGACGGCCTGGTTCCCTGAACCAGTGACTTTTGAAGATGTGACGCTGGGTTTTACCC
CAGAAGAGTGGGGAATGCTGGACCTTGAACAGAAGTCCCTGTACAGGGAGGTGTTGCTGG
AGAACTACAGGAACCTGGTCTCAGTGGAGCATCAGCTTTCCAAGCCAGATGTGGTATCTC
AGTTAGAGGAGGAGGAAGAGCTCTGGTCGGTGGAGAGAGGAATTCCTCAAGACACCTTTT
CAGAGTGTCCTGAGGCTCATCTGGACCCTCAATTCGATCCTTTTCCTGCTGAGAGTCCCC
TGATGAAGATCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAGTGCGCCGCGCGCGGGGTGAGTGCGGCGCCAAAACCGCGCCCGTCGGGGACTCTGTT
CCAGGCCGGCTCTGCAGGGCAAGCCCAGCCGCAGCCCCCATTTCGCCAAACACAAGAGGA
GCTCAGAACCACCTCGCCTGCCGTCCTTCCGCCGCGGGGCCTGAAGGGGCAGTGGGGGTC
GGGGACTTGGGGCCCAAAAGATGCGGGGACCGGGCGGGCCGTCCCCCCTCAGGGCTCGTG
AAGGGACTCTGCCCACTCCCCCGAGACACCTCCAGGAAGAGGAAGGCATGGCTTCCGGGC
TTCCGACGGCCTGGTTCCCTGAACCAGTGACTTTTGAAGATGTGACGCTGGGTTTTACCC
CAGAAGAGTGGGGAATGCTGGACCTTGAACAGAAGTCCCTGTACAGGGAGGTGTTGCTGG
AGAACTACAGGAACCTGGTCTCAGTGGAGCATCAGCTTTCCAAGCCAGATGTGGTATCTC
AGTTAGAGGAGGAGGAAGAGCTCTGGTCGGTGGAGAGAGGAATTCCTCAAGACACCTTTT
CAGAGTGTCCTGAGGCTCATCTGGACCCTCAATTCGATCCTTTTCCTGCTGAGAGTCCCC
TGATGAAGATCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55650023|ref|XP_512945.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55650023|ref|XP_512945.1|

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               6-196, gnl|bosTau2|chr18 (56289416-56289230)
               

               
               6-196, gnl|canFam2|chr1 (102787681-102787338)
               

               
               6-196, gnl|dasNov1|scaffold_51410 (2601-2275)
               

               
               6-196, gnl|echTel1|scaffold_233798 (1167-1523)
               

               
               6-196, gnl|hg17|chr19 (63386397-63386740)
               

               
               6-196, gnl|Hg17|chr19 (63386611-63386794)
               

               
               6-196, gnl|loxAfr1|scaffold_35770 (18582-18262)
               

               
               6-196, gnl|mm7|chr7 (11421433-11421709)
               

               
               6-196, gnl|oryCun1|scaffold_95221 (4233-4574)
               

               
               6-196, gnl|panTro1|chr20 (61123398-61123741)
               

               
               6-196, gnl|rheMac2|chr19 (63948437-63948780)
               

               
               6-196, gnl|rn3|chr1 (72813123-72813401)
               


               
               281-547, gnl|bosTau2|chr17 (22472381-22472641)
               

               
               281-547, gnl|Hg17|chr12 (132308774-132308511)
               


               
               338-447, gnl|bosTau2|chr13 (22119007-22119116)
               

               
               338-447, gnl|Hg17|chr20 (18234342-18234451)
               

               
               338-447, gnl|Mm7|chr13 (47981708-47981599)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-196, gnl|bosTau2|chr18 (56289416-56289230)
               

               
               6-196, gnl|canFam2|chr1 (102787681-102787338)
               

               
               6-196, gnl|dasNov1|scaffold_51410 (2601-2275)
               

               
               6-196, gnl|echTel1|scaffold_233798 (1167-1523)
               

               
               6-196, gnl|hg17|chr19 (63386397-63386740)
               

               
               6-196, gnl|Hg17|chr19 (63386611-63386794)
               

               
               6-196, gnl|loxAfr1|scaffold_35770 (18582-18262)
               

               
               6-196, gnl|mm7|chr7 (11421433-11421709)
               

               
               6-196, gnl|oryCun1|scaffold_95221 (4233-4574)
               

               
               6-196, gnl|panTro1|chr20 (61123398-61123741)
               

               
               6-196, gnl|rheMac2|chr19 (63948437-63948780)
               

               
               6-196, gnl|rn3|chr1 (72813123-72813401)
               


               
               281-547, gnl|bosTau2|chr17 (22472381-22472641)
               

               
               281-547, gnl|Hg17|chr12 (132308774-132308511)
               


               
               338-447, gnl|bosTau2|chr13 (22119007-22119116)
               

               
               338-447, gnl|Hg17|chr20 (18234342-18234451)
               

               
               338-447, gnl|Mm7|chr13 (47981708-47981599)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               jej (0.0989218)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.0989218)

	6-196, gnl\|bosTau2\|chr18 (56289416-56289230)
	6-196, gnl\|canFam2\|chr1 (102787681-102787338)
	6-196, gnl\|dasNov1\|scaffold_51410 (2601-2275)
	6-196, gnl\|echTel1\|scaffold_233798 (1167-1523)
	6-196, gnl\|hg17\|chr19 (63386397-63386740)
	6-196, gnl\|Hg17\|chr19 (63386611-63386794)
	6-196, gnl\|loxAfr1\|scaffold_35770 (18582-18262)
	6-196, gnl\|mm7\|chr7 (11421433-11421709)
	6-196, gnl\|oryCun1\|scaffold_95221 (4233-4574)
	6-196, gnl\|panTro1\|chr20 (61123398-61123741)
	6-196, gnl\|rheMac2\|chr19 (63948437-63948780)
	6-196, gnl\|rn3\|chr1 (72813123-72813401)

	281-547, gnl\|bosTau2\|chr17 (22472381-22472641)
	281-547, gnl\|Hg17\|chr12 (132308774-132308511)

	338-447, gnl\|bosTau2\|chr13 (22119007-22119116)
	338-447, gnl\|Hg17\|chr20 (18234342-18234451)
	338-447, gnl\|Mm7\|chr13 (47981708-47981599)