Ss1.1-rjej26b_l16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGCGCTTCCTGGCCACGGAAATCCCTGATTTCAATCAGGATGACTTGGAAGAGGATGAT GTGTTCCTGCTAGACGTCTGGGACCAGGTCTTTTTCTGGATTGGGAAGAATGCCAATGAG GACGAGAAGAAAGCTGCAGCCGTCACGGCGCAGGAGTATCTCAAGACCCATCCCAGCGGC CGGGACCCCGAGACCCCCATCATTGTGGTGAAGCAAGGATATGAGCCCCCCACCTTCACA GGCTGGTTCCTGGCTTGGGATCCCTTCAAGTGGAGTGACTCCAAATCCTATGAGGACCTG AAGGCGGAGCTTGGAAACTCTGGGGACTGGAGCCAGATCACTGCTGAGATCAAAAACCCT AAACCAGACGTGTTCAATGCTAACACCAACCTCAGTTCTGGTCCTCTACCCATCTTTCCC CTGGAGCAGCTGGTGAACAAGCCTGCAGAGGAGCTTCCTCAGGGTGTGGACCCCAGCAGG AGGGAGGAGCACCTGTCCATTGAAGATTTCACCAAGGCCTTGGGGATGACTCCTGCTGCC TTCTCTGCTCTGCCTCGATGGAAACAACAGAATCTCAAGAAAGAAAAAGGACTATTTTGA GAAGCAAGAGTAGTTGTGGCTTAAGATAGTACCCTACCCTGCCTGCAGAACTTCATTGTT ATTATTGGTGTTTGTGCTACATACCAGTTGAAAATTTACATAGTACCTGTGAGCAGCAGC CTGTGGAGATGCCACTTTTGTTTAGTATCCTATTCCTCCAGAAAGATGATGCCTCTGTCA GAAGCCTGTGGTCCCAAGTTCAGCTCTCAAGGTGGTTGCATTGTTTATTACTTCTTAACC ATCCTGTTCAAGAGTTTTCTCTCCTTAGAAGAGCAGCCCACTCTACAGAACATTAGTTAG GAAGAACCCTCCTTAGCTTTTATCATGACTCACTTTTAATTATGGCAGGTGGGCTGAAGC ATTTTGCAGTTTTTATCTTTCCCAGAGTAATGGCTTTTCCTTTTCACATATGCTTTTCTC AGGTGACAAGTAAAAGGGGACCCCTTCTTTGAAAGAGCTGAATGGCCCAGGCGGTAGCCC TATTAGGAGGTTTTGGAACGCTCATGAACCAGTACCCAGTGAGGATAATGTGCCCCGTGG GCCTCGGCTTGAGGCCTAACAAAAGTATGAAATGCAAACGCTATCTCACCGGCTCTCTGG TCCTCTTAGTAATAAGGCAAAGGAAGAGCACAGCTAAGGCCAACGCTGGGTTTACAAACT GTTATCAGAACCTCTGCAAAGCTTCAGTCTTCTCGGATGAAAACCACTGGAGGGGGGTGC TGACTTGGCCATACCTGATTTCCCATCCCACTTCCCTGACGCTGTAACAGTGCTGCTTGC TTGGACGTCAAAGTCAGAAGGCCGACAGAGGGTGACTCCCACAACTTCAACTGGTTAACT GTCTGCAGGAATATGTCCTTTTCAGAAATAACAGTTGCGCCAACACAAGGTTAATAAAGG CTTTAATTTCACACACACAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGCGCTTCCTGGCCACGGAAATCCCTGATTTCAATCAGGATGACTTGGAAGAGGATGAT GTGTTCCTGCTAGACGTCTGGGACCAGGTCTTTTTCTGGATTGGGAAGAATGCCAATGAG GACGAGAAGAAAGCTGCAGCCGTCACGGCGCAGGAGTATCTCAAGACCCATCCCAGCGGC CGGGACCCCGAGACCCCCATCATTGTGGTGAAGCAAGGATATGAGCCCCCCACCTTCACA GGCTGGTTCCTGGCTTGGGATCCCTTCAAGTGGAGTGACTCCAAATCCTATGAGGACCTG AAGGCGGAGCTTGGAAACTCTGGGGACTGGAGCCAGATCACTGCTGAGATCAAAAACCCT AAACCAGACGTGTTCAATGCTAACACCAACCTCAGTTCTGGTCCTCTACCCATCTTTCCC CTGGAGCAGCTGGTGAACAAGCCTGCAGAGGAGCTTCCTCAGGGTGTGGACCCCAGCAGG AGGGAGGAGCACCTGTCCATTGAAGATTTCACCAAGGCCTTGGGGATGACTCCTGCTGCC TTCTCTGCTCTGCCTCGATGGAAACAACAGAATCTCAAGAAAGAAAAAGGACTATTTTGA GAAGCAAGAGTAGTTGTGGCTTAAGATAGTACCCTACCCTGCCTGCAGAACTTCATTGTT ATTATTGGTGTTTGTGCTACATACCAGTTGAAAATTTACATAGTACCTGTGAGCAGCAGC CTGTGGAGATGCCACTTTTGTTTAGTATCCTATTCCTCCAGAAAGATGATGCCTCTGTCA GAAGCCTGTGGTCCCAAGTTCAGCTCTCAAGGTGGTTGCATTGTTTATTACTTCTTAACC ATCCTGTTCAAGAGTTTTCTCTCCTTAGAAGAGCAGCCCACTCTACAGAACATTAGTTAG GAAGAACCCTCCTTAGCTTTTATCATGACTCACTTTTAATTATGGCAGGTGGGCTGAAGC ATTTTGCAGTTTTTATCTTTCCCAGAGTAATGGCTTTTCCTTTTCACATATGCTTTTCTC AGGTGACAAGTAAAAGGGGACCCCTTCTTTGAAAGAGCTGAATGGCCCAGGCGGTAGCCC TATTAGGAGGTTTTGGAACGCTCATGAACCAGTACCCAGTGAGGATAATGTGCCCCGTGG GCCTCGGCTTGAGGCCTAACAAAAGTATGAAATGCAAACGCTATCTCACCGGCTCTCTGG TCCTCTTAGTAATAAGGCAAAGGAAGAGCACAGCTAAGGCCAACGCTGGGTTTACAAACT GTTATCAGAACCTCTGCAAAGCTTCAGTCTTCTCGGATGAAAACCACTGGAGGGGGGTGC TGACTTGGCCATACCTGATTTCCCATCCCACTTCCCTGACGCTGTAACAGTGCTGCTTGC TTGGACGTCAAAGTCAGAAGGCCGACAGAGGGTGACTCCCACAACTTCAACTGGTTAACT GTCTGCAGGAATATGTCCTTTTCAGAAATAACAGTTGCGCCAACACAAGGTTAATAAAGG CTTTAATTTCACACACACAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1050-1247, - strand, RNAz p=0.880721 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1050-1247, - strand, RNAz p=0.880721 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 85-277, gnl|bosTau2|chr2 (59646477-59646285) | |
| 85-277, gnl|canFam2|chr37 (28081487-28081766) | |
| 85-277, gnl|danRer3|chrNA (91072914-91072665) | |
| 85-277, gnl|dasNov1|scaffold_6578 (50511-50232) | |
| 85-277, gnl|echTel1|scaffold_319337 (112486-112287) | |
| 85-277, gnl|fr1|chrUn (122605768-122605559) | |
| 85-277, gnl|galGal2|chr7 (23276883-23276685) | |
| 85-277, gnl|hg17|chr2 (219127342-219127602) | |
| 85-277, gnl|Hg17|chr2 (219127349-219127541) | |
| 85-277, gnl|loxAfr1|scaffold_24999 (46854-46580) | |
| 85-277, gnl|mm7|chr1 (74667730-74668000) | |
| 85-277, gnl|Mm7|chr1 (74667737-74667929) | |
| 85-277, gnl|monDom2|scaffold_39 (2143749-2143544) | |
| 85-277, gnl|oryCun1|scaffold_164508 (322-547) | |
| 85-277, gnl|panTro1|chr13 (109287051-109287311) | |
| 85-277, gnl|rheMac2|chr12 (82275332-82275592) | |
| 85-277, gnl|rn3|chr9 (73913473-73913743) | |
| 85-277, gnl|tetNig1|chr6 (3140150-3140346) | |
| 85-277, gnl|xenTro1|scaffold_31 (1621429-1621653) | |
| 485-1009, gnl|bosTau2|chr2 (59640201-59639664) | |
| 485-1009, gnl|Hg17|chr2 (219139449-219139998) | |
| 1011-1523, gnl|bosTau2|chr2 (59639615-59639117) | |
| 1011-1523, gnl|Hg17|chr2 (219140012-219140518) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 85-277, gnl|bosTau2|chr2 (59646477-59646285) | |
| 85-277, gnl|canFam2|chr37 (28081487-28081766) | |
| 85-277, gnl|danRer3|chrNA (91072914-91072665) | |
| 85-277, gnl|dasNov1|scaffold_6578 (50511-50232) | |
| 85-277, gnl|echTel1|scaffold_319337 (112486-112287) | |
| 85-277, gnl|fr1|chrUn (122605768-122605559) | |
| 85-277, gnl|galGal2|chr7 (23276883-23276685) | |
| 85-277, gnl|hg17|chr2 (219127342-219127602) | |
| 85-277, gnl|Hg17|chr2 (219127349-219127541) | |
| 85-277, gnl|loxAfr1|scaffold_24999 (46854-46580) | |
| 85-277, gnl|mm7|chr1 (74667730-74668000) | |
| 85-277, gnl|Mm7|chr1 (74667737-74667929) | |
| 85-277, gnl|monDom2|scaffold_39 (2143749-2143544) | |
| 85-277, gnl|oryCun1|scaffold_164508 (322-547) | |
| 85-277, gnl|panTro1|chr13 (109287051-109287311) | |
| 85-277, gnl|rheMac2|chr12 (82275332-82275592) | |
| 85-277, gnl|rn3|chr9 (73913473-73913743) | |
| 85-277, gnl|tetNig1|chr6 (3140150-3140346) | |
| 85-277, gnl|xenTro1|scaffold_31 (1621429-1621653) | |
| 485-1009, gnl|bosTau2|chr2 (59640201-59639664) | |
| 485-1009, gnl|Hg17|chr2 (219139449-219139998) | |
| 1011-1523, gnl|bosTau2|chr2 (59639615-59639117) | |
| 1011-1523, gnl|Hg17|chr2 (219140012-219140518) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| ill (1.22915) | |
| sin (1.22463) | |
| jej (1.18706) | |
| cje (0.991408) | |
| nje (0.66368) | |
| col (0.585023) | |
| duo (0.518403) | |
| sto (0.179824) | |
| cki (0.165235) | |
| nco (0.161734) | |
| kid (0.129735) | |
| eje (0.0988338) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (1.22915) | |
| sin (1.22463) | |
| jej (1.18706) | |
| cje (0.991408) | |
| nje (0.66368) | |
| col (0.585023) | |
| duo (0.518403) | |
| sto (0.179824) | |
| cki (0.165235) | |
| nco (0.161734) | |
| kid (0.129735) | |
| eje (0.0988338) |