Non-Coding RNA Search

Ss1.1-rjej28b_b16.5

Sequence:


               
               TTCCTAGCTCATAATTGGTCAAAGTGCCTGGTAGCATGGCTGCTGTGTCCACGTGATCCA
ATTCAAAGTTTATAAAAGCGTTTTAACTTAATGCAACGTGTCTAGCCTGCACATCTGCAG
CTGGCTCTCCTCCTGGACTCTGCAGACTGTCCCATAGCATGTCCTCTTTCAGTGGCGGTG
GGGGACATCCACTCAGTGCATAGCTTCCCTGGCATAGCAAACCTGGCAGCGGGGGGGCCT
TGACTGACCCTCCCAGAAAGTGACCACTACAAGTGGCAGCAAGCTGAATGCCCTCGCCCG
TGGGCAGTTAGGAGAGCGAGGGCCAGCTCAGGAGTCTGGGGACCCAGTACGTCCCAGAGA
AATCTGAAAAAGCTGAAGGAGTTGAGCCTTGAAAGCAGCCTCCAGTGCTCTGGTTCCCAC
ACCAGGTCGATGCAAGGGTTCTAATGGGAAATTTCAAACTCTCCCTACCTGCTAGCATTT
ACAGTCCCTGTGAAGAAAGTAGCCACACTCTCCAATAGCAAAGGGAATGTTGCAGAACTT
TTTCTTCCTTAAAAAAATTGAGAAAATTGCATTTGTGCTTGTTGACAAGCCAGGTTAAAG
TCCCAGAGTTTGTGAGATTTCAGGTGGAAGGGAGAAATAGTAGAAGCTAGTATATTTTTT
ATATTTTTGTAACAATTGCTTTTTTCATGGGGGAGGAGGGGTTAGTATTTGTAGTTTTAA
CAAGTCCAGTAGTTTTTTATAAATCTCTTCAGAGGATAAATAACCCTAAAATCTTTGCAA
CATTTACATGATTTTTTAAGAAGATGCCGTATACACTAGGTTTGCTTTTAAAATAAATGA
ATAAAAACTTAATGAGGTTATCTGGTTGAGGAGGTTAATTTCATTCAGGTAGGAACGCTA
ATCAGGGTAGGTGTGATTTTCTGCAGATTCTGGTGTCTTGTTTGGGCACCACCAGAGAAA
GTTATTTGTCATGTGGGGTCGTGCTTTAAAGTTGCACCTGTGAAGTTTGCTGTGTTCACC
TAAGTCTCACGTGGGGGATGCTGGGCTGTACTTTGATGGTCCATCACCCTGCACCTTGAG
GCTGGACTTGGTGGTCCCAGTGTTTAAGGATTTGCAGGAAGAGCTGTTTTCCAGTCTAGA
TTCTCAAAGGCATCTCCTGACAAAGGTACTTCATGACAGCTCTGGTGGAAATATCTAAAC
AATAAAATATGTGTCCAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCTAGCTCATAATTGGTCAAAGTGCCTGGTAGCATGGCTGCTGTGTCCACGTGATCCA
ATTCAAAGTTTATAAAAGCGTTTTAACTTAATGCAACGTGTCTAGCCTGCACATCTGCAG
CTGGCTCTCCTCCTGGACTCTGCAGACTGTCCCATAGCATGTCCTCTTTCAGTGGCGGTG
GGGGACATCCACTCAGTGCATAGCTTCCCTGGCATAGCAAACCTGGCAGCGGGGGGGCCT
TGACTGACCCTCCCAGAAAGTGACCACTACAAGTGGCAGCAAGCTGAATGCCCTCGCCCG
TGGGCAGTTAGGAGAGCGAGGGCCAGCTCAGGAGTCTGGGGACCCAGTACGTCCCAGAGA
AATCTGAAAAAGCTGAAGGAGTTGAGCCTTGAAAGCAGCCTCCAGTGCTCTGGTTCCCAC
ACCAGGTCGATGCAAGGGTTCTAATGGGAAATTTCAAACTCTCCCTACCTGCTAGCATTT
ACAGTCCCTGTGAAGAAAGTAGCCACACTCTCCAATAGCAAAGGGAATGTTGCAGAACTT
TTTCTTCCTTAAAAAAATTGAGAAAATTGCATTTGTGCTTGTTGACAAGCCAGGTTAAAG
TCCCAGAGTTTGTGAGATTTCAGGTGGAAGGGAGAAATAGTAGAAGCTAGTATATTTTTT
ATATTTTTGTAACAATTGCTTTTTTCATGGGGGAGGAGGGGTTAGTATTTGTAGTTTTAA
CAAGTCCAGTAGTTTTTTATAAATCTCTTCAGAGGATAAATAACCCTAAAATCTTTGCAA
CATTTACATGATTTTTTAAGAAGATGCCGTATACACTAGGTTTGCTTTTAAAATAAATGA
ATAAAAACTTAATGAGGTTATCTGGTTGAGGAGGTTAATTTCATTCAGGTAGGAACGCTA
ATCAGGGTAGGTGTGATTTTCTGCAGATTCTGGTGTCTTGTTTGGGCACCACCAGAGAAA
GTTATTTGTCATGTGGGGTCGTGCTTTAAAGTTGCACCTGTGAAGTTTGCTGTGTTCACC
TAAGTCTCACGTGGGGGATGCTGGGCTGTACTTTGATGGTCCATCACCCTGCACCTTGAG
GCTGGACTTGGTGGTCCCAGTGTTTAAGGATTTGCAGGAAGAGCTGTTTTCCAGTCTAGA
TTCTCAAAGGCATCTCCTGACAAAGGTACTTCATGACAGCTCTGGTGGAAATATCTAAAC
AATAAAATATGTGTCCAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               2-308, gnl|bosTau2|chr18 (15685085-15685390)
               

               
               2-308, gnl|Hg17|chr16 (45521433-45521728)
               

               
               2-308, gnl|Mm7|chr8 (84117118-84117389)
               


               
               356-1220, gnl|bosTau2|chr18 (15685477-15686367)
               

               
               356-1220, gnl|Hg17|chr16 (45521813-45522696)
               

               
               356-1220, gnl|Mm7|chr8 (84117480-84118265)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-308, gnl|bosTau2|chr18 (15685085-15685390)
               

               
               2-308, gnl|Hg17|chr16 (45521433-45521728)
               

               
               2-308, gnl|Mm7|chr8 (84117118-84117389)
               


               
               356-1220, gnl|bosTau2|chr18 (15685477-15686367)
               

               
               356-1220, gnl|Hg17|chr16 (45521813-45522696)
               

               
               356-1220, gnl|Mm7|chr8 (84117480-84118265)

Expressed library(ies): 22 entry(ies)

More info

Expressed library(ies): 22 entry(ies)

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               cki (0.660939)
               

               
               kid (0.518941)
               

               
               bla (0.497389)
               

               
               sag (0.36543)
               

               
               fbs (0.350693)
               

               
               sme (0.305437)
               

               
               csk (0.281492)
               

               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               eep (0.122564)
               

               
               jej (0.0989218)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.660939)
               

               
               kid (0.518941)
               

               
               bla (0.497389)
               

               
               sag (0.36543)
               

               
               fbs (0.350693)
               

               
               sme (0.305437)
               

               
               csk (0.281492)
               

               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               eep (0.122564)
               

               
               jej (0.0989218)

	2-308, gnl\|bosTau2\|chr18 (15685085-15685390)
	2-308, gnl\|Hg17\|chr16 (45521433-45521728)
	2-308, gnl\|Mm7\|chr8 (84117118-84117389)

	356-1220, gnl\|bosTau2\|chr18 (15685477-15686367)
	356-1220, gnl\|Hg17\|chr16 (45521813-45522696)
	356-1220, gnl\|Mm7\|chr8 (84117480-84118265)

	cki (0.660939)
	kid (0.518941)
	bla (0.497389)
	sag (0.36543)
	fbs (0.350693)
	sme (0.305437)
	csk (0.281492)
	fce (0.271592)
	ece (0.229305)
	spc (0.226732)
	cmu (0.186393)
	sto (0.179824)
	ton (0.1755)
	fhi (0.169578)
	lun (0.150489)
	fat (0.147427)
	ski (0.146735)
	ute (0.132784)
	cov (0.132153)
	ova (0.129132)
	eep (0.122564)
	jej (0.0989218)