Non-Coding RNA Search

Ss1.1-rjej28b_e1.5

Sequence:


               
               ATGCCTGCTGACGGCAACTTTCTAACGGTAATTTCCCCAATCCAGACACCACAAAGCTCG
CCGAGCGGAGCTCAGTTGCGGGCTGGGCTGCAATCAATGCCTCAGGAACGAGGGGACGCC
ATCCCTATGCTCCTGGGACCCAGGGAACCCATGTCTAGGGCCCTCTGGCTTATTATCTCA
ATGCCTAGCTCTGGGCTGTTTCTTCTATTTCATTCCCTGGCCCAGGCGCCGCCACCACCA
CACACATTCCAGCCATACCCCCAGGTCTCTGCCTGCCACACCTTCCTGGGCTCCAGTGTC
TGCTTCTCAGCCCCCTCCCTCACATCCTGAGTAAACTCTGTCCCCAGATAACCTCTTGAG
TGTGATCCTCAAATCTCTGTGAGCCTCAGTTTCTCCCCCATAGAATGGGGGTAATAATCT
CTTTCGCTCACTGTGGCTGTGTTAGGAGAAAACTCTGGAACCTGGGAAAGCTGTGTTCCT
ACATCAGAAATCAGTGGTGCTGTTCCTGCCAGGAACTTGGGCTTTTATCTGGATCGCCTT
TCTCCATGACTCTCAAGCCTCCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGCCTGCTGACGGCAACTTTCTAACGGTAATTTCCCCAATCCAGACACCACAAAGCTCG
CCGAGCGGAGCTCAGTTGCGGGCTGGGCTGCAATCAATGCCTCAGGAACGAGGGGACGCC
ATCCCTATGCTCCTGGGACCCAGGGAACCCATGTCTAGGGCCCTCTGGCTTATTATCTCA
ATGCCTAGCTCTGGGCTGTTTCTTCTATTTCATTCCCTGGCCCAGGCGCCGCCACCACCA
CACACATTCCAGCCATACCCCCAGGTCTCTGCCTGCCACACCTTCCTGGGCTCCAGTGTC
TGCTTCTCAGCCCCCTCCCTCACATCCTGAGTAAACTCTGTCCCCAGATAACCTCTTGAG
TGTGATCCTCAAATCTCTGTGAGCCTCAGTTTCTCCCCCATAGAATGGGGGTAATAATCT
CTTTCGCTCACTGTGGCTGTGTTAGGAGAAAACTCTGGAACCTGGGAAAGCTGTGTTCCT
ACATCAGAAATCAGTGGTGCTGTTCCTGCCAGGAACTTGGGCTTTTATCTGGATCGCCTT
TCTCCATGACTCTCAAGCCTCCAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               75-230, - strand, RNAz p=0.714182

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               75-230, - strand, RNAz p=0.714182

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-564, gnl|bosTau2|chr3 (9276914-9276361)
               

               
               1-564, gnl|Hg17|chr1 (151994690-151994121)
               

               
               1-564, gnl|Mm7|chr3 (89337381-89337944)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-564, gnl|bosTau2|chr3 (9276914-9276361)
               

               
               1-564, gnl|Hg17|chr1 (151994690-151994121)
               

               
               1-564, gnl|Mm7|chr3 (89337381-89337944)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               jej (0.197844)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.197844)
               

               
               ecc (0.115035)

	1-564, gnl\|bosTau2\|chr3 (9276914-9276361)
	1-564, gnl\|Hg17\|chr1 (151994690-151994121)
	1-564, gnl\|Mm7\|chr3 (89337381-89337944)