Non-Coding RNA Search

Ss1.1-rjej28b_e17.5

Sequence:


               
               TCTATTATTATCCCCACACAGATCAATTATTTATTAATAGAATTCAGTAGAGTTCACATG
CTGACTCCATGGATACTTACAATTGAGGAAAATGTGACAGATTATTAATTTATCTTTAGT
TCAAAATAATGTCATTGCAGTCTGGATAAGTTATAATAAGTTCACTTATTTGAAATAAAA
TCTCTGAAAAGACTTAAGCATATTTAAATGCTATTAAGGTGCAAAGCAATAGGGCTTCAG
TGTTTTCACACCTAAATTCATATATTTAGATGACTGTTTTCCTTGCCAGTGTGTTAATGT
TAATATTTTCATTTTTTTTCAGACATACTACAGTGTAAAATCAGTGTGAGCATTTGTGTA
AATTCATAAAAAACTTAATGTTCAAATTCTCAGGAATTAAGGACTAACCATAACATTGTC
AGTTCTAGTTAAATTTTATAAAAGACGGCAAGTTTTTTACTTCCCTTGAGTGGGGCTTTC
CTCTCCCCCAATTCTAAGACAATACAGTATGTATAATAAAAAACATTAATAAATATAATT
TCAAAAATGTAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTATTATTATCCCCACACAGATCAATTATTTATTAATAGAATTCAGTAGAGTTCACATG
CTGACTCCATGGATACTTACAATTGAGGAAAATGTGACAGATTATTAATTTATCTTTAGT
TCAAAATAATGTCATTGCAGTCTGGATAAGTTATAATAAGTTCACTTATTTGAAATAAAA
TCTCTGAAAAGACTTAAGCATATTTAAATGCTATTAAGGTGCAAAGCAATAGGGCTTCAG
TGTTTTCACACCTAAATTCATATATTTAGATGACTGTTTTCCTTGCCAGTGTGTTAATGT
TAATATTTTCATTTTTTTTCAGACATACTACAGTGTAAAATCAGTGTGAGCATTTGTGTA
AATTCATAAAAAACTTAATGTTCAAATTCTCAGGAATTAAGGACTAACCATAACATTGTC
AGTTCTAGTTAAATTTTATAAAAGACGGCAAGTTTTTTACTTCCCTTGAGTGGGGCTTTC
CTCTCCCCCAATTCTAAGACAATACAGTATGTATAATAAAAAACATTAATAAATATAATT
TCAAAAATGTAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               383-501, - strand, RNAz p=0.721859

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               383-501, - strand, RNAz p=0.721859

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-551, gnl|bosTau2|chr2 (80735443-80735983)
               

               
               1-551, gnl|Hg17|chr12 (104064834-104065379)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-551, gnl|bosTau2|chr2 (80735443-80735983)
               

               
               1-551, gnl|Hg17|chr12 (104064834-104065379)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               kid (0.259471)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               mgm (0.180343)
               

               
               rec (0.17307)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               lnt (0.142308)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               jej (0.0989218)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.259471)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               mgm (0.180343)
               

               
               rec (0.17307)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               lnt (0.142308)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               jej (0.0989218)

	1-551, gnl\|bosTau2\|chr2 (80735443-80735983)
	1-551, gnl\|Hg17\|chr12 (104064834-104065379)

	kid (0.259471)
	mas (0.210305)
	fcc (0.197785)
	mgm (0.180343)
	rec (0.17307)
	nje (0.16592)
	nco (0.161734)
	lnt (0.142308)
	tra (0.123092)
	med (0.116252)
	jej (0.0989218)