Non-Coding RNA Search

Ss1.1-rjej28b_g1.5

Sequence:


               
               AGTTCCAGGAAACTGGATTCTTTAGACTAACTGACCATGGACTAGAGGAGATTTCTTCCT
GTCGCCAGAAAGGATTTCATCCACACAGCAAGGATCCACCTCTCTTCTGTAGCTGCAGCC
ATGTGACTGTTGTGGACAGAGCAGTGACCATCATAGACCTTCGATGAGAGTTTGACTCAG
ACACCTCCCAAGAACTATAAAACCATATCAGTGTACTGTAGCCCCTTAATTTAGGCTTTC
CAGAAAGCTCTGGAAGCTTTTTTAAACAGGATAGAAAGTGAGTATCACCGGGGGGAGAAC
TGATTTTCTATTTCTGGTTTGAAAAGAATGTTTTTTAGGCACATCTGGGAAATAGCATGA
TCATGCTAAAACAACTTTTCAGTCTGCCTGTAACTAAAAAACTAAGGTGAAAAAATGATG
GAATGAACACTCATATACCCTTTGTTCTAAATTCACCAATTGTTAACGTTTTTTTCCCTC
TCAGATATCCTTCTGATTTCTCTGCCAACTTGTTTATTGTTTACCTTTGGACTAATTAAG
GGCATCTATGCAGACATTTGGAAGCCATTTAAAAAATCTTTGGGTTTTTCTGTGGTTTAC
GGCAATATTAATGAAGCTTATTATAAGGCTGAGGGAGAGTTCACTATGTCTGACCAGATG
GCGAGGCTCGAAAACCCTGAAGAATGATTTTGTCAGGAATTACTGTTATTTAACAGATAT
TTCAGGATATTTTTTCTTCTACAATAAAGTAACAATTAACTTATAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTTCCAGGAAACTGGATTCTTTAGACTAACTGACCATGGACTAGAGGAGATTTCTTCCT
GTCGCCAGAAAGGATTTCATCCACACAGCAAGGATCCACCTCTCTTCTGTAGCTGCAGCC
ATGTGACTGTTGTGGACAGAGCAGTGACCATCATAGACCTTCGATGAGAGTTTGACTCAG
ACACCTCCCAAGAACTATAAAACCATATCAGTGTACTGTAGCCCCTTAATTTAGGCTTTC
CAGAAAGCTCTGGAAGCTTTTTTAAACAGGATAGAAAGTGAGTATCACCGGGGGGAGAAC
TGATTTTCTATTTCTGGTTTGAAAAGAATGTTTTTTAGGCACATCTGGGAAATAGCATGA
TCATGCTAAAACAACTTTTCAGTCTGCCTGTAACTAAAAAACTAAGGTGAAAAAATGATG
GAATGAACACTCATATACCCTTTGTTCTAAATTCACCAATTGTTAACGTTTTTTTCCCTC
TCAGATATCCTTCTGATTTCTCTGCCAACTTGTTTATTGTTTACCTTTGGACTAATTAAG
GGCATCTATGCAGACATTTGGAAGCCATTTAAAAAATCTTTGGGTTTTTCTGTGGTTTAC
GGCAATATTAATGAAGCTTATTATAAGGCTGAGGGAGAGTTCACTATGTCTGACCAGATG
GCGAGGCTCGAAAACCCTGAAGAATGATTTTGTCAGGAATTACTGTTATTTAACAGATAT
TTCAGGATATTTTTTCTTCTACAATAAAGTAACAATTAACTTATAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61881641|ref|XP_581539.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61881641|ref|XP_581539.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               102-765, gnl|bosTau2|chr11 (9437171-9436505)
               

               
               102-765, gnl|Hg17|chr2 (74000976-74001666)
               

               
               102-765, gnl|Mm7|chr6 (83569430-83568607)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               102-765, gnl|bosTau2|chr11 (9437171-9436505)
               

               
               102-765, gnl|Hg17|chr2 (74000976-74001666)
               

               
               102-765, gnl|Mm7|chr6 (83569430-83568607)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               mgp (0.461361)
               

               
               cte (0.29274)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               isp (0.150376)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               jej (0.0989218)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.461361)
               

               
               cte (0.29274)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               isp (0.150376)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               jej (0.0989218)

	102-765, gnl\|bosTau2\|chr11 (9437171-9436505)
	102-765, gnl\|Hg17\|chr2 (74000976-74001666)
	102-765, gnl\|Mm7\|chr6 (83569430-83568607)

	mgp (0.461361)
	cte (0.29274)
	rec (0.17307)
	duo (0.172801)
	isp (0.150376)
	nmm (0.132802)
	sug (0.127291)
	jej (0.0989218)