Non-Coding RNA Search

Ss1.1-rjej28b_h24.5

Sequence:


               
               AGAAATTTCCAGGGCAGCTTCCCTGCAGCCTCTCCCTTCGGAGCTCAGAAACCAACACCA
TGACTCTGATCCTGGGTTACTGGGACATCCGTGGGCTGGCCCACGCCATCCGCCTGCTCC
TGGAGTACACAGACTCCAGCTACGAGGAGAAGAAGTACACGATGGGGGACGCTCCCGACT
ATGACAGAAGCCAGTGGCTGAGTGACAAATTCAAGCTGGGCCTGGACTTCCCCAATCTGC
CCTACTTAATTGACGGGGCTCACAAGCTGACCCAGAGCAACGCCATCCTGCGCTACATTG
CTCGCAAGCACAACATGTGTGGGGAGACAGAGGAGGAGAAGATTCGAGTGGATGTTTTGG
AGAACCAGGCCAACGACACATCTGAAGCCTTGGCCAGTCTTTGCTACAGCCCTGACTTTG
AGAAACTGAAGCCTGGGTACTTGAAGGAGATCCCTGAAAAGATGAAGCCCTTCTCCGAGT
TTCTGGGGAAGAGGCCTTGGTTTGCAGGGGACAAGCTCACCTATGTGGATTTCCTGGCTT
ACGATGTCCTTGACCTGTACCGCATATTTGATCCCAAGTGCCTGGATGAATTCCCAAACC
TGAAAGACTTCATCACTCGCTTTGAGGGCCTAAAGAAGATCTCTGCCTACATGAAGTCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAATTTCCAGGGCAGCTTCCCTGCAGCCTCTCCCTTCGGAGCTCAGAAACCAACACCA
TGACTCTGATCCTGGGTTACTGGGACATCCGTGGGCTGGCCCACGCCATCCGCCTGCTCC
TGGAGTACACAGACTCCAGCTACGAGGAGAAGAAGTACACGATGGGGGACGCTCCCGACT
ATGACAGAAGCCAGTGGCTGAGTGACAAATTCAAGCTGGGCCTGGACTTCCCCAATCTGC
CCTACTTAATTGACGGGGCTCACAAGCTGACCCAGAGCAACGCCATCCTGCGCTACATTG
CTCGCAAGCACAACATGTGTGGGGAGACAGAGGAGGAGAAGATTCGAGTGGATGTTTTGG
AGAACCAGGCCAACGACACATCTGAAGCCTTGGCCAGTCTTTGCTACAGCCCTGACTTTG
AGAAACTGAAGCCTGGGTACTTGAAGGAGATCCCTGAAAAGATGAAGCCCTTCTCCGAGT
TTCTGGGGAAGAGGCCTTGGTTTGCAGGGGACAAGCTCACCTATGTGGATTTCCTGGCTT
ACGATGTCCTTGACCTGTACCGCATATTTGATCCCAAGTGCCTGGATGAATTCCCAAACC
TGAAAGACTTCATCACTCGCTTTGAGGGCCTAAAGAAGATCTCTGCCTACATGAAGTCCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|7582395|gb|AAF64308.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|7582395|gb|AAF64308.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               42-660, gnl|bosTau2|chr29 (27087386-27087981)
               

               
               42-660, gnl|Hg17|chr6 (111475433-111474820)
               

               
               42-660, gnl|Mm7|chr5 (115863175-115862560)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               42-660, gnl|bosTau2|chr29 (27087386-27087981)
               

               
               42-660, gnl|Hg17|chr6 (111475433-111474820)
               

               
               42-660, gnl|Mm7|chr5 (115863175-115862560)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cga (0.279096)
               

               
               cag (0.151194)
               

               
               med (0.116252)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               cag (0.151194)
               

               
               med (0.116252)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	42-660, gnl\|bosTau2\|chr29 (27087386-27087981)
	42-660, gnl\|Hg17\|chr6 (111475433-111474820)
	42-660, gnl\|Mm7\|chr5 (115863175-115862560)

	cga (0.279096)
	cag (0.151194)
	med (0.116252)
	jej (0.0989218)
	eje (0.0988338)