Ss1.1-rjej28b_h9.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAAAAAACCATAACCGAGAAGCTCCAAGCCTACAGAATAAAAAGTGCGATTCCAGAAGC ACCTGGGAGGTGATCAGCAGTTCCGAGGATTTTAATATCACAGAAGTAATGGTGGCACCG CCCCCGGCACCCGTCTTCTCGTTGCTGAAGATCAGTGAGAGAATTGTGTGCTTAGTTCTC GATAAGTCCGGAAGCATGTCAAGTTCTAACCGCCTGAATCGAATGAATCAAGCAGCAAAG TATTTCCTCATGCAGATTGTTGAAAATGGATCCTGGGTGGGGATGGTGCACTTTGACGGC ACTGCCAGCATCAGAAGTGATCTAATCCAAATAACAGGCAGCAACGAAAGAGACAAGCTC TTGGGGAGCTTACCTACCACTGCTAATGGAGGCACTTCTATCTGCTCTGGGATTCAAACA GCGTTTGAGGTGGTTAGAAAACTTTACTCACACACAGATGGATCTGAAATAGTGCTGCTG ACTGATGGAGAAGATAACACTGCAGGTGCTTGTGTCAATGAAGTGAAACAAAGTGGGGCC ATCATTCATTTTATTGCTCTGGGACCAAGTGCTGATAAAGCAGTCATAGAGATGAGCACG GCAACAGGAGGAGTCCATTTTTATGCTACAGATGAAGCCGAGAACAATGGCCTCATTGAT GCTTTTGGGGCTCTCGCATCAGGAAACACCGATATCTCTCAGCAGTCTCTTCAGCTTGAA AGCAAAGGACTGAAACTCAACAGTAATGAGTGGTTGAATGGCACTGTGATAATTGACAGC ACCGTGGGAAAGGACACATTCTTTCTTGTCACATGGGTCCAACAACGTCCCGATATTTCT CTCTTGGATCCCAATGGAACACTGATGGGAAGCTTCACAGTGGATGCCGTTTCCAAAATG GCCCATCTCAGTATTCCAGGAACTGCAAAGGTGGGTGTTTGGACTTACAGTCTTCAAGCA AAAGCAAACGCAGAAACATTAACAATTACAGTAAATTCACAGGCATCAAATTCTGCTGTG CCCCCAATCACAGTGAATGCTAAAATGAATAAAGACACAAGCAGCTTCCCCAGCCCGATG ATTGTCTATGCAGAAATTCTACAAGGGTATATCCCCATTCTCGGAGCCGGTGTGACTGCT TTCATTGAATCAAATACTGGGAAAAGAGAAGTTTTGGAACTTTTGGATAACGGTGCAGGT GCTGATTCTATCAAGAATGATGGCGTCTACTCAAGATATTTTACGGCTTATTCAGAAAAT GGCAGATATAGCTTAAAAGTACGGGCTCTTGGAGGAGCAAGTGCTGTCACACGAAACTTA AGGCATCCATTGAATAGAGCTGCATATATACCAGGCTGGGTAGTGAATGGGGAAATTGAA GAGAATCCACCAAGACCTGAAATTGATGAGAACACTCAGACAAATTTGGAGAGTTTCACC AGAACAGCAATAGGAGGTGCATTTGTGGTTTCAAATGTTCCAAATGGCCCCTTGCCTGAC CTCTACCCACCGAGTCAAATCACAGACCTGGAGGCCACCTCAGATGAGGATGAGATCAGG ATAACATGGACGGCACCGGGAGACGATTTTGATGTTGGAACAGTTGAACAGTATATCATA AGAATAAGCGGAAGTCTCTTGGATCTAAGGGATAATTTTGACGACGCTCTGCAAATAAAC ACTTCTGCTCTGTTACCAAGCGAGGCCAACACCAAGGAAAGCTTTGCATTCAAACCAGGA AATCTCTCAGAAGAAAATGCAACCCACATATTCATTGCCATTCGAAGTGTGGATAAAAGC AACTTGACATCGAAAGTATCCAACATTGCGCAAGTAGCTTTGTTTACTCCCGAAGCAGAT CCCAGTCCTGACGACAGTCATCCAGATCCTGGTCCTGCTAAATCCGGAGTCAGCATCTCT ACCTTGGTGCTGATAGTGGTTGGCTCTGTAGTAATCGTGAGCCTGATTTTAAGTGTCACC ATTTGCATCTTAAACAAGAATAGAAATACTAGAAGACCTAGAACAGGGTTTTAAAAAACA TCAACAACAAAAGTAGAGGATGTTTCTGAATTTTAAAATTTATGATATATGATCATGAAC TCATGCAAATAATTTTAAGAGTTTCAGAAGGGTTACTTTGATTAAATATAAAATTCAGGG GTATCTGAAAAATTGTGAATCGATATTAAATAATTGTATTTATTCACTGTTTTATCACAA AAAGGGAGAAATAAAATATCCTTTTTCATATTCAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAAAAAACCATAACCGAGAAGCTCCAAGCCTACAGAATAAAAAGTGCGATTCCAGAAGC ACCTGGGAGGTGATCAGCAGTTCCGAGGATTTTAATATCACAGAAGTAATGGTGGCACCG CCCCCGGCACCCGTCTTCTCGTTGCTGAAGATCAGTGAGAGAATTGTGTGCTTAGTTCTC GATAAGTCCGGAAGCATGTCAAGTTCTAACCGCCTGAATCGAATGAATCAAGCAGCAAAG TATTTCCTCATGCAGATTGTTGAAAATGGATCCTGGGTGGGGATGGTGCACTTTGACGGC ACTGCCAGCATCAGAAGTGATCTAATCCAAATAACAGGCAGCAACGAAAGAGACAAGCTC TTGGGGAGCTTACCTACCACTGCTAATGGAGGCACTTCTATCTGCTCTGGGATTCAAACA GCGTTTGAGGTGGTTAGAAAACTTTACTCACACACAGATGGATCTGAAATAGTGCTGCTG ACTGATGGAGAAGATAACACTGCAGGTGCTTGTGTCAATGAAGTGAAACAAAGTGGGGCC ATCATTCATTTTATTGCTCTGGGACCAAGTGCTGATAAAGCAGTCATAGAGATGAGCACG GCAACAGGAGGAGTCCATTTTTATGCTACAGATGAAGCCGAGAACAATGGCCTCATTGAT GCTTTTGGGGCTCTCGCATCAGGAAACACCGATATCTCTCAGCAGTCTCTTCAGCTTGAA AGCAAAGGACTGAAACTCAACAGTAATGAGTGGTTGAATGGCACTGTGATAATTGACAGC ACCGTGGGAAAGGACACATTCTTTCTTGTCACATGGGTCCAACAACGTCCCGATATTTCT CTCTTGGATCCCAATGGAACACTGATGGGAAGCTTCACAGTGGATGCCGTTTCCAAAATG GCCCATCTCAGTATTCCAGGAACTGCAAAGGTGGGTGTTTGGACTTACAGTCTTCAAGCA AAAGCAAACGCAGAAACATTAACAATTACAGTAAATTCACAGGCATCAAATTCTGCTGTG CCCCCAATCACAGTGAATGCTAAAATGAATAAAGACACAAGCAGCTTCCCCAGCCCGATG ATTGTCTATGCAGAAATTCTACAAGGGTATATCCCCATTCTCGGAGCCGGTGTGACTGCT TTCATTGAATCAAATACTGGGAAAAGAGAAGTTTTGGAACTTTTGGATAACGGTGCAGGT GCTGATTCTATCAAGAATGATGGCGTCTACTCAAGATATTTTACGGCTTATTCAGAAAAT GGCAGATATAGCTTAAAAGTACGGGCTCTTGGAGGAGCAAGTGCTGTCACACGAAACTTA AGGCATCCATTGAATAGAGCTGCATATATACCAGGCTGGGTAGTGAATGGGGAAATTGAA GAGAATCCACCAAGACCTGAAATTGATGAGAACACTCAGACAAATTTGGAGAGTTTCACC AGAACAGCAATAGGAGGTGCATTTGTGGTTTCAAATGTTCCAAATGGCCCCTTGCCTGAC CTCTACCCACCGAGTCAAATCACAGACCTGGAGGCCACCTCAGATGAGGATGAGATCAGG ATAACATGGACGGCACCGGGAGACGATTTTGATGTTGGAACAGTTGAACAGTATATCATA AGAATAAGCGGAAGTCTCTTGGATCTAAGGGATAATTTTGACGACGCTCTGCAAATAAAC ACTTCTGCTCTGTTACCAAGCGAGGCCAACACCAAGGAAAGCTTTGCATTCAAACCAGGA AATCTCTCAGAAGAAAATGCAACCCACATATTCATTGCCATTCGAAGTGTGGATAAAAGC AACTTGACATCGAAAGTATCCAACATTGCGCAAGTAGCTTTGTTTACTCCCGAAGCAGAT CCCAGTCCTGACGACAGTCATCCAGATCCTGGTCCTGCTAAATCCGGAGTCAGCATCTCT ACCTTGGTGCTGATAGTGGTTGGCTCTGTAGTAATCGTGAGCCTGATTTTAAGTGTCACC ATTTGCATCTTAAACAAGAATAGAAATACTAGAAGACCTAGAACAGGGTTTTAAAAAACA TCAACAACAAAAGTAGAGGATGTTTCTGAATTTTAAAATTTATGATATATGATCATGAAC TCATGCAAATAATTTTAAGAGTTTCAGAAGGGTTACTTTGATTAAATATAAAATTCAGGG GTATCTGAAAAATTGTGAATCGATATTAAATAATTGTATTTATTCACTGTTTTATCACAA AAAGGGAGAAATAAAATATCCTTTTTCATATTCAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 1-198, gnl|bosTau2|chr3 (42396592-42396789) | |
| 1-198, gnl|Hg17|chr1 (86743524-86743721) | |
| 1-198, gnl|Mm7|chr3 (144859479-144859282) | |
| 204-432, gnl|bosTau2|chr3 (42400397-42400625) | |
| 204-432, gnl|Hg17|chr1 (86745130-86745358) | |
| 204-432, gnl|Mm7|chr3 (144856885-144856657) | |
| 606-714, gnl|bosTau2|chr3 (42406422-42406530) | |
| 606-714, gnl|canFam2|chr6 (64627542-64627461) | |
| 606-714, gnl|danRer3|chr16 (10791500-10791435) | |
| 606-714, gnl|dasNov1|scaffold_125218 (38788-38707) | |
| 606-714, gnl|echTel1|scaffold_290505 (40315-40234) | |
| 606-714, gnl|galGal2|chr8 (16316217-16316148) | |
| 606-714, gnl|hg17|chr1 (86750301-86750382) | |
| 606-714, gnl|Hg17|chr1 (86750316-86750424) | |
| 606-714, gnl|loxAfr1|scaffold_31511 (19467-19386) | |
| 606-714, gnl|mm7|chr3 (144853801-144853720) | |
| 606-714, gnl|Mm7|chr3 (144853784-144853676) | |
| 606-714, gnl|monDom2|scaffold_123 (416582-416663) | |
| 606-714, gnl|oryCun1|scaffold_203982 (10570-10651) | |
| 606-714, gnl|panTro1|chr1 (85414652-85414733) | |
| 606-714, gnl|rheMac2|chr1 (89295481-89295562) | |
| 606-714, gnl|rn3|chr2 (242996184-242996103) | |
| 606-714, gnl|xenTro1|scaffold_74 (229570-229484) | |
| 929-1200, gnl|bosTau2|chr3 (42408357-42408628) | |
| 929-1200, gnl|Hg17|chr1 (86753034-86753305) | |
| 929-1200, gnl|Mm7|chr3 (144850458-144850187) | |
| 1602-2220, gnl|bosTau2|chr3 (42413363-42413980) | |
| 1602-2220, gnl|canFam2|chr6 (64619466-64618959) | |
| 1602-2220, gnl|dasNov1|scaffold_4670 (4124-3600) | |
| 1602-2220, gnl|echTel1|scaffold_290505 (33773-33246) | |
| 1602-2220, gnl|galGal2|chr8 (16311787-16311296) | |
| 1602-2220, gnl|hg17|chr1 (86757638-86758179) | |
| 1602-2220, gnl|Hg17|chr1 (86757644-86758293) | |
| 1602-2220, gnl|loxAfr1|scaffold_31511 (11387-10887) | |
| 1602-2220, gnl|mm7|chr3 (144846158-144845661) | |
| 1602-2220, gnl|Mm7|chr3 (144846151-144845571) | |
| 1602-2220, gnl|monDom2|scaffold_123 (445767-446268) | |
| 1602-2220, gnl|oryCun1|scaffold_203982 (17443-17945) | |
| 1602-2220, gnl|panTro1|chr1 (85422171-85422766) | |
| 1602-2220, gnl|rheMac2|chr1 (89302850-89303421) | |
| 1602-2220, gnl|rn3|chr2 (242989512-242988953) | |
| 1602-2220, gnl|xenTro1|scaffold_74 (222511-221967) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-198, gnl|bosTau2|chr3 (42396592-42396789) | |
| 1-198, gnl|Hg17|chr1 (86743524-86743721) | |
| 1-198, gnl|Mm7|chr3 (144859479-144859282) | |
| 204-432, gnl|bosTau2|chr3 (42400397-42400625) | |
| 204-432, gnl|Hg17|chr1 (86745130-86745358) | |
| 204-432, gnl|Mm7|chr3 (144856885-144856657) | |
| 606-714, gnl|bosTau2|chr3 (42406422-42406530) | |
| 606-714, gnl|canFam2|chr6 (64627542-64627461) | |
| 606-714, gnl|danRer3|chr16 (10791500-10791435) | |
| 606-714, gnl|dasNov1|scaffold_125218 (38788-38707) | |
| 606-714, gnl|echTel1|scaffold_290505 (40315-40234) | |
| 606-714, gnl|galGal2|chr8 (16316217-16316148) | |
| 606-714, gnl|hg17|chr1 (86750301-86750382) | |
| 606-714, gnl|Hg17|chr1 (86750316-86750424) | |
| 606-714, gnl|loxAfr1|scaffold_31511 (19467-19386) | |
| 606-714, gnl|mm7|chr3 (144853801-144853720) | |
| 606-714, gnl|Mm7|chr3 (144853784-144853676) | |
| 606-714, gnl|monDom2|scaffold_123 (416582-416663) | |
| 606-714, gnl|oryCun1|scaffold_203982 (10570-10651) | |
| 606-714, gnl|panTro1|chr1 (85414652-85414733) | |
| 606-714, gnl|rheMac2|chr1 (89295481-89295562) | |
| 606-714, gnl|rn3|chr2 (242996184-242996103) | |
| 606-714, gnl|xenTro1|scaffold_74 (229570-229484) | |
| 929-1200, gnl|bosTau2|chr3 (42408357-42408628) | |
| 929-1200, gnl|Hg17|chr1 (86753034-86753305) | |
| 929-1200, gnl|Mm7|chr3 (144850458-144850187) | |
| 1602-2220, gnl|bosTau2|chr3 (42413363-42413980) | |
| 1602-2220, gnl|canFam2|chr6 (64619466-64618959) | |
| 1602-2220, gnl|dasNov1|scaffold_4670 (4124-3600) | |
| 1602-2220, gnl|echTel1|scaffold_290505 (33773-33246) | |
| 1602-2220, gnl|galGal2|chr8 (16311787-16311296) | |
| 1602-2220, gnl|hg17|chr1 (86757638-86758179) | |
| 1602-2220, gnl|Hg17|chr1 (86757644-86758293) | |
| 1602-2220, gnl|loxAfr1|scaffold_31511 (11387-10887) | |
| 1602-2220, gnl|mm7|chr3 (144846158-144845661) | |
| 1602-2220, gnl|Mm7|chr3 (144846151-144845571) | |
| 1602-2220, gnl|monDom2|scaffold_123 (445767-446268) | |
| 1602-2220, gnl|oryCun1|scaffold_203982 (17443-17945) | |
| 1602-2220, gnl|panTro1|chr1 (85422171-85422766) | |
| 1602-2220, gnl|rheMac2|chr1 (89302850-89303421) | |
| 1602-2220, gnl|rn3|chr2 (242989512-242988953) | |
| 1602-2220, gnl|xenTro1|scaffold_74 (222511-221967) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| sin (10.8467) | |
| lin (6.55213) | |
| rec (6.4036) | |
| jej (3.75903) | |
| ill (2.10711) | |
| col (0.975039) | |
| duo (0.864006) | |
| nje (0.8296) | |
| cje (0.495704) | |
| eje (0.395335) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sin (10.8467) | |
| lin (6.55213) | |
| rec (6.4036) | |
| jej (3.75903) | |
| ill (2.10711) | |
| col (0.975039) | |
| duo (0.864006) | |
| nje (0.8296) | |
| cje (0.495704) | |
| eje (0.395335) |