Non-Coding RNA Search

Ss1.1-rjej28b_n16.5

Sequence:


               
               AAATCCTTGCTGTTTGGCCATGGTCAGATAACTTGACCTCTCTGAGCCTCTATCCATAAA
ATGGCGGTGATAGTACCCCCTCATTGGATTGCTATGAGGATGAAGTGAGTTAATATACAT
GGTAAGTGGTGGCTGTAGGAAGTGACAGGTGATTGGTGTTCAAAGACCCAGCCATTTCTT
TGTGGCCAGGTGTTCTGCCTCGTGTTTGGGGGGACTGCTGTGTTGCCTGCCTGCTCTAAT
GGAAACACACCTTCCGTTGCTAGGGGACACCCCCTTCCAGTGCTGGCTCTGTAGCGCCAA
GTTCAAAATCAGCTCGGACTTGAAAAGGCACATGATCGTGCACTCGGGGGAGAAGCCTTT
CAAGTGCGAGTACTGTGACGTGCGCTGCACCATGAAGGCCAACCTCAAGTCGCACATCCG
CATCAAGCACACCTTCAAGTGCCTGCACTGCGCCTTCCAGGGCCGGGACCGGGCCGACCT
CCTGGAGCACAGCCGGCTGCACCAGGCCGACCACTCCGAGAAGTGTCCCGAGTGTAGCTA
CTCCTGCTCCAGTGCGGCCGCCCTGCGCGTGCACAGCCGGGTCCACTGCAAAGACCGTCC
CTTCAAGTGCGACTTCTGCAGCTTCGACACCAAGCGGCCCAGCAGCCTGGCCAAGCACAT
CGACAAGGTGCACAGGGACGAGGCCAAAACGGAGAACCGGGCCCCGCAGGGCAGGGAAGG
GCCCCATGCGGGCAGCGCCCACCACGTGGCCAAGATCGTGACCCAGAGGGCCTTCCGCTG
TGAGACCTGCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATCCTTGCTGTTTGGCCATGGTCAGATAACTTGACCTCTCTGAGCCTCTATCCATAAA
ATGGCGGTGATAGTACCCCCTCATTGGATTGCTATGAGGATGAAGTGAGTTAATATACAT
GGTAAGTGGTGGCTGTAGGAAGTGACAGGTGATTGGTGTTCAAAGACCCAGCCATTTCTT
TGTGGCCAGGTGTTCTGCCTCGTGTTTGGGGGGACTGCTGTGTTGCCTGCCTGCTCTAAT
GGAAACACACCTTCCGTTGCTAGGGGACACCCCCTTCCAGTGCTGGCTCTGTAGCGCCAA
GTTCAAAATCAGCTCGGACTTGAAAAGGCACATGATCGTGCACTCGGGGGAGAAGCCTTT
CAAGTGCGAGTACTGTGACGTGCGCTGCACCATGAAGGCCAACCTCAAGTCGCACATCCG
CATCAAGCACACCTTCAAGTGCCTGCACTGCGCCTTCCAGGGCCGGGACCGGGCCGACCT
CCTGGAGCACAGCCGGCTGCACCAGGCCGACCACTCCGAGAAGTGTCCCGAGTGTAGCTA
CTCCTGCTCCAGTGCGGCCGCCCTGCGCGTGCACAGCCGGGTCCACTGCAAAGACCGTCC
CTTCAAGTGCGACTTCTGCAGCTTCGACACCAAGCGGCCCAGCAGCCTGGCCAAGCACAT
CGACAAGGTGCACAGGGACGAGGCCAAAACGGAGAACCGGGCCCCGCAGGGCAGGGAAGG
GCCCCATGCGGGCAGCGCCCACCACGTGGCCAAGATCGTGACCCAGAGGGCCTTCCGCTG
TGAGACCTGCGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55654864|ref|XP_525415.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55654864|ref|XP_525415.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               101-217, - strand, RNAz p=0.909197

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               101-217, - strand, RNAz p=0.909197

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               8-792, gnl|bosTau2|chr3 (63478483-63479263)
               

               
               8-792, gnl|canFam2|chr24 (41184355-41184959)
               

               
               8-792, gnl|danRer3|chrNA (253327942-253327302)
               

               
               8-792, gnl|dasNov1|scaffold_85620 (3869-3265)
               

               
               8-792, gnl|echTel1|scaffold_200358 (2404-3008)
               

               
               8-792, gnl|fr1|chrUn (40022116-40021521)
               

               
               8-792, gnl|galGal2|chr20 (12596289-12595667)
               

               
               8-792, gnl|hg17|chr20 (50134621-50135225)
               

               
               8-792, gnl|Hg17|chr20 (50135490-50134684)
               

               
               8-792, gnl|loxAfr1|scaffold_1929 (70758-71362)
               

               
               8-792, gnl|mm7|chr2 (168686596-168687200)
               

               
               8-792, gnl|monDom2|scaffold_1 (164354549-164355192)
               

               
               8-792, gnl|oryCun1|scaffold_209487 (32832-32231)
               

               
               8-792, gnl|panTro1|chr21_random (15665899-15666503)
               

               
               8-792, gnl|rheMac2|chr10 (12376027-12375423)
               

               
               8-792, gnl|rn3|chr3 (159887778-159888382)
               

               
               8-792, gnl|tetNig1|chr9 (9807879-9808488)
               

               
               8-792, gnl|xenTro1|scaffold_165 (1910696-1911310)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-792, gnl|bosTau2|chr3 (63478483-63479263)
               

               
               8-792, gnl|canFam2|chr24 (41184355-41184959)
               

               
               8-792, gnl|danRer3|chrNA (253327942-253327302)
               

               
               8-792, gnl|dasNov1|scaffold_85620 (3869-3265)
               

               
               8-792, gnl|echTel1|scaffold_200358 (2404-3008)
               

               
               8-792, gnl|fr1|chrUn (40022116-40021521)
               

               
               8-792, gnl|galGal2|chr20 (12596289-12595667)
               

               
               8-792, gnl|hg17|chr20 (50134621-50135225)
               

               
               8-792, gnl|Hg17|chr20 (50135490-50134684)
               

               
               8-792, gnl|loxAfr1|scaffold_1929 (70758-71362)
               

               
               8-792, gnl|mm7|chr2 (168686596-168687200)
               

               
               8-792, gnl|monDom2|scaffold_1 (164354549-164355192)
               

               
               8-792, gnl|oryCun1|scaffold_209487 (32832-32231)
               

               
               8-792, gnl|panTro1|chr21_random (15665899-15666503)
               

               
               8-792, gnl|rheMac2|chr10 (12376027-12375423)
               

               
               8-792, gnl|rn3|chr3 (159887778-159888382)
               

               
               8-792, gnl|tetNig1|chr9 (9807879-9808488)
               

               
               8-792, gnl|xenTro1|scaffold_165 (1910696-1911310)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jej (0.0989218)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.0989218)

	8-792, gnl\|bosTau2\|chr3 (63478483-63479263)
	8-792, gnl\|canFam2\|chr24 (41184355-41184959)
	8-792, gnl\|danRer3\|chrNA (253327942-253327302)
	8-792, gnl\|dasNov1\|scaffold_85620 (3869-3265)
	8-792, gnl\|echTel1\|scaffold_200358 (2404-3008)
	8-792, gnl\|fr1\|chrUn (40022116-40021521)
	8-792, gnl\|galGal2\|chr20 (12596289-12595667)
	8-792, gnl\|hg17\|chr20 (50134621-50135225)
	8-792, gnl\|Hg17\|chr20 (50135490-50134684)
	8-792, gnl\|loxAfr1\|scaffold_1929 (70758-71362)
	8-792, gnl\|mm7\|chr2 (168686596-168687200)
	8-792, gnl\|monDom2\|scaffold_1 (164354549-164355192)
	8-792, gnl\|oryCun1\|scaffold_209487 (32832-32231)
	8-792, gnl\|panTro1\|chr21_random (15665899-15666503)
	8-792, gnl\|rheMac2\|chr10 (12376027-12375423)
	8-792, gnl\|rn3\|chr3 (159887778-159888382)
	8-792, gnl\|tetNig1\|chr9 (9807879-9808488)
	8-792, gnl\|xenTro1\|scaffold_165 (1910696-1911310)