Non-Coding RNA Search

Ss1.1-rjej29b_j24.5

Sequence:


               
               GAAGCCCCCGAGGCCGCGCCAGGCCAGACTAAGCCTAGCCAGGCTCCAAAGAAACGGACC
CGGAAGGCAAAGGCGACCCAGGCCCAGAAACTGCGGAACTCGGCCAAGGGAAAGGTTCCC
AAGTCGGCGCTGGGTGAAGTCGGGCAAGAATTCTAGTTGTCCTCCCTCCAGTGGCCACTG
AGACAGAGATGGGACAGACCCACCTGAGGCAGAGTAATCGCGTCCAGACCAAGGTGAACA
CTAGAGTCGCCGTACAGAATACTGACCTCAGTCTCATGTCTTTTAAAACAAAAGACCTTG
GAGTTCCCGTCGTGGCTCGCTCAGTGGTTAACAAATCCGACTAGGAACCATGAGGTCGCG
GGTTCGATCCCTGGCCTTGCTCAGTGGGTTAAGGACATGGCGTTGCCGTGAGCTGTGGTG
TAGGTCGCAGACGAAGCTCGGAGCCCAAGGTGCTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGCCCCCGAGGCCGCGCCAGGCCAGACTAAGCCTAGCCAGGCTCCAAAGAAACGGACC
CGGAAGGCAAAGGCGACCCAGGCCCAGAAACTGCGGAACTCGGCCAAGGGAAAGGTTCCC
AAGTCGGCGCTGGGTGAAGTCGGGCAAGAATTCTAGTTGTCCTCCCTCCAGTGGCCACTG
AGACAGAGATGGGACAGACCCACCTGAGGCAGAGTAATCGCGTCCAGACCAAGGTGAACA
CTAGAGTCGCCGTACAGAATACTGACCTCAGTCTCATGTCTTTTAAAACAAAAGACCTTG
GAGTTCCCGTCGTGGCTCGCTCAGTGGTTAACAAATCCGACTAGGAACCATGAGGTCGCG
GGTTCGATCCCTGGCCTTGCTCAGTGGGTTAAGGACATGGCGTTGCCGTGAGCTGTGGTG
TAGGTCGCAGACGAAGCTCGGAGCCCAAGGTGCTGT

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               3-144, gnl|bosTau2|chr5 (11466-11607)
               

               
               3-144, gnl|canFam2|chr10 (28586091-28585915)
               

               
               3-144, gnl|echTel1|scaffold_305675 (7377-7192)
               

               
               3-144, gnl|galGal2|chr1 (47305788-47305655)
               

               
               3-144, gnl|hg17|chr22 (38252873-38253063)
               

               
               3-144, gnl|Hg17|chr22 (38253030-38252889)
               

               
               3-144, gnl|loxAfr1|scaffold_63174 (4618-4436)
               

               
               3-144, gnl|mm7|chr15 (80348439-80348630)
               

               
               3-144, gnl|Mm7|chr15 (80348600-80348453)
               

               
               3-144, gnl|monDom2|scaffold_133 (1682360-1682190)
               

               
               3-144, gnl|panTro1|chr23 (38501430-38501620)
               

               
               3-144, gnl|rheMac2|chr10 (83458954-83459144)
               

               
               3-144, gnl|rn3|chr7 (118579185-118579379)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-144, gnl|bosTau2|chr5 (11466-11607)
               

               
               3-144, gnl|canFam2|chr10 (28586091-28585915)
               

               
               3-144, gnl|echTel1|scaffold_305675 (7377-7192)
               

               
               3-144, gnl|galGal2|chr1 (47305788-47305655)
               

               
               3-144, gnl|hg17|chr22 (38252873-38253063)
               

               
               3-144, gnl|Hg17|chr22 (38253030-38252889)
               

               
               3-144, gnl|loxAfr1|scaffold_63174 (4618-4436)
               

               
               3-144, gnl|mm7|chr15 (80348439-80348630)
               

               
               3-144, gnl|Mm7|chr15 (80348600-80348453)
               

               
               3-144, gnl|monDom2|scaffold_133 (1682360-1682190)
               

               
               3-144, gnl|panTro1|chr23 (38501430-38501620)
               

               
               3-144, gnl|rheMac2|chr10 (83458954-83459144)
               

               
               3-144, gnl|rn3|chr7 (118579185-118579379)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               ebs (0.118301)
               

               
               jej (0.0989218)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)
               

               
               jej (0.0989218)

	3-144, gnl\|bosTau2\|chr5 (11466-11607)
	3-144, gnl\|canFam2\|chr10 (28586091-28585915)
	3-144, gnl\|echTel1\|scaffold_305675 (7377-7192)
	3-144, gnl\|galGal2\|chr1 (47305788-47305655)
	3-144, gnl\|hg17\|chr22 (38252873-38253063)
	3-144, gnl\|Hg17\|chr22 (38253030-38252889)
	3-144, gnl\|loxAfr1\|scaffold_63174 (4618-4436)
	3-144, gnl\|mm7\|chr15 (80348439-80348630)
	3-144, gnl\|Mm7\|chr15 (80348600-80348453)
	3-144, gnl\|monDom2\|scaffold_133 (1682360-1682190)
	3-144, gnl\|panTro1\|chr23 (38501430-38501620)
	3-144, gnl\|rheMac2\|chr10 (83458954-83459144)
	3-144, gnl\|rn3\|chr7 (118579185-118579379)