Non-Coding RNA Search

Ss1.1-rjej29b_n11.5

Sequence:


               
               GAACGTGATATTGGCCGCAGGCCTACTTTCCTTGGGTGACTTGGGTCACAGCCCATTGCT
TGCCGACGAAGATCACTTGCAGCCTCTGACGCGTCCCTCCGGAGCGGCAGCGACGCTTTC
ATGGAGAAGGTCCCGGGACGGTTGCCGGCGAAGTCGCGGGGCGCCAGGTGCAGCAATGGA
TTCCCCGAAGGGGAGCCGCCTCGACCCGGGCCGAGCACGCCGGCGGAGAAGCCGCCGCGG
CCAGAGAGCCAGAGTGCCCAGCCAGCGGACGGTTGGAAGGGCGAGCGGCCCCGCAGCGAG
GAGGACAACGAGCTGAACCTCCCCAATCTGGCGGCTGCCTACACGTCCATCCTGCGCTCG
CTGGGAGAAGACCCCCAGCGGCAGGGGCTGCTCAAGACGCCCTGGAGGGCGGCCACGGCC
ATGCAGTTCTTCACCAAGGGCTACCAGGAGACCATCTCAGATGTCCTCAACGACGCTATC
TTTGATGAAGATCATGATGAGATGGTGATTGTGAAGGACATCGATATGTTTTCTATGTGT
GAACATCATCTAGTTCCATTTATTGGAAAGGTCCATATCGGTTATCTTCCTAACAAGCAA
GTTCTTGGCCTCAGCAAACTTGCTAGGATTGTAGAAATCTATAGTAGAAGATTACAAGTT
CAAGAGCGTCTTACAAAACAAATTGCTGTAGCAATCACAGAGGCCTTGCGACCTGCTGGA
GTCGGAGTAGTGGTTGAAGCAACACACATGTGTATGGTAATGCGAGGGGTGCAGAAAATG
AACAGTAGAACCGTGACCAGCACAATGTTGGGGGTGTTCCGGGAGGACCCCAAGACCCGG
GAAGAGTTTCTGACTCTCATTAAGAGCTGAACCTCAGCGTGTGCCACGTGGTTTACAGAT
TGTGCCACTAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACGTGATATTGGCCGCAGGCCTACTTTCCTTGGGTGACTTGGGTCACAGCCCATTGCT
TGCCGACGAAGATCACTTGCAGCCTCTGACGCGTCCCTCCGGAGCGGCAGCGACGCTTTC
ATGGAGAAGGTCCCGGGACGGTTGCCGGCGAAGTCGCGGGGCGCCAGGTGCAGCAATGGA
TTCCCCGAAGGGGAGCCGCCTCGACCCGGGCCGAGCACGCCGGCGGAGAAGCCGCCGCGG
CCAGAGAGCCAGAGTGCCCAGCCAGCGGACGGTTGGAAGGGCGAGCGGCCCCGCAGCGAG
GAGGACAACGAGCTGAACCTCCCCAATCTGGCGGCTGCCTACACGTCCATCCTGCGCTCG
CTGGGAGAAGACCCCCAGCGGCAGGGGCTGCTCAAGACGCCCTGGAGGGCGGCCACGGCC
ATGCAGTTCTTCACCAAGGGCTACCAGGAGACCATCTCAGATGTCCTCAACGACGCTATC
TTTGATGAAGATCATGATGAGATGGTGATTGTGAAGGACATCGATATGTTTTCTATGTGT
GAACATCATCTAGTTCCATTTATTGGAAAGGTCCATATCGGTTATCTTCCTAACAAGCAA
GTTCTTGGCCTCAGCAAACTTGCTAGGATTGTAGAAATCTATAGTAGAAGATTACAAGTT
CAAGAGCGTCTTACAAAACAAATTGCTGTAGCAATCACAGAGGCCTTGCGACCTGCTGGA
GTCGGAGTAGTGGTTGAAGCAACACACATGTGTATGGTAATGCGAGGGGTGCAGAAAATG
AACAGTAGAACCGTGACCAGCACAATGTTGGGGGTGTTCCGGGAGGACCCCAAGACCCGG
GAAGAGTTTCTGACTCTCATTAAGAGCTGAACCTCAGCGTGTGCCACGTGGTTTACAGAT
TGTGCCACTAGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|13272331|gb|AAK17098.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13272331|gb|AAK17098.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-460, gnl|bosTau2|chr10 (45691995-45692462)
               

               
               1-460, gnl|Hg17|chr14 (54439271-54438789)
               

               
               1-460, gnl|Mm7|chr14 (42510500-42510062)
               


               
               744-911, gnl|bosTau2|chr10 (45746385-45746552)
               

               
               744-911, gnl|Hg17|chr14 (54380611-54380441)
               

               
               744-911, gnl|Mm7|chr14 (42477033-42476861)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-460, gnl|bosTau2|chr10 (45691995-45692462)
               

               
               1-460, gnl|Hg17|chr14 (54439271-54438789)
               

               
               1-460, gnl|Mm7|chr14 (42510500-42510062)
               


               
               744-911, gnl|bosTau2|chr10 (45746385-45746552)
               

               
               744-911, gnl|Hg17|chr14 (54380611-54380441)
               

               
               744-911, gnl|Mm7|chr14 (42477033-42476861)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cte (0.29274)
               

               
               cje (0.165235)
               

               
               fco (0.157208)
               

               
               cst (0.140036)
               

               
               jej (0.0989218)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               cje (0.165235)
               

               
               fco (0.157208)
               

               
               cst (0.140036)
               

               
               jej (0.0989218)

	1-460, gnl\|bosTau2\|chr10 (45691995-45692462)
	1-460, gnl\|Hg17\|chr14 (54439271-54438789)
	1-460, gnl\|Mm7\|chr14 (42510500-42510062)

	744-911, gnl\|bosTau2\|chr10 (45746385-45746552)
	744-911, gnl\|Hg17\|chr14 (54380611-54380441)
	744-911, gnl\|Mm7\|chr14 (42477033-42476861)

	cte (0.29274)
	cje (0.165235)
	fco (0.157208)
	cst (0.140036)
	jej (0.0989218)