Non-Coding RNA Search

Ss1.1-rjej30b_b19.5

Sequence:


               
               CAAGCTGGCGTCCTGGGCCCCCATCCTGGGTTTCGTGGTGATGATGTCGCTGGACGTTGG
TCTGGGCTAGGGCTGAAAGGCTTCCGGACCCCAGGGAAGGCAGCACAGGCAAACCGCCAT
GGTTGGCTTCTGCAGGACCGCAAGCCTCTTTCTTCACATGAAAACATGCTTCCCTTCCCC
CTTTCATCTCATGACCTTGATTGACTGTGATTATAAGAAGACAGTCTTTTTAGTTTTCTT
TTGTGGGAGATAGTGGTTTTATTTGGAATTTCAAGTTGCCCCAGAACTATAGATTTTTGC
TTGGCCGCTAAATGGAATCGCTCTTCGGTGGGGTTACCCAGGACCTACAGATCAGGGAAA
TCTTTGCCTTTGTAACCTTCAGTCTCCCTCGCTAGACGCAATGCTGACTCCTCAAGGTCA
CTGACAGAAGCAAGCTACCAAGAGAGGCGTCTCCTAAGCATCCTTGCCTAGTGACTGGGC
GCAGAATGGCTAGGACAGCGCTCCTCCGTCCCTCCTGATCTTTCACTGCTGATCCCCCCA
TCCAGACTGGAGCTGGAGCATCCTGGACAAAGCACCCTGCTTGCCAAGGTCTAAGGAGGA
ACATACCTTCCTCTGCCTCCCCGCAGGGAGATGTGATGTGGGACGAGGCTCAGACAAAGG
GAAGCAAATCGGCTAGTCTCTCTCTCTCTCTTTTTTTAAGGCAAAGATTGACTCATGGAT
GTGAAGGGAATTAAAACCACTGTGAACGCACAGTGGGCCCTGTGAAAAGAGGGCAGAGCG
AAGCTTTGATCAGAGACCTCTGCTCTCTCTGAATTCCCAGAGCAACCTGGTTTGCCATGG
TTTTCAAATCCCCAGGTGTGTACTTTGATGAGTCCTTCATTTCTCTAAGACACTCGGGGA
CACCAGCAAACGGCTAGAACGCAAACCTTTCAGTTACTTGTGGCAGGAACCATGTAAGCT
AATTTATGTGGGTGAAAGATATTTGGAATCTGCACTGGATCCTTCTCCGTTGACCATTTG
GTACCTGTATCCTGACCCAGACCTCTTAAGCTACAGCAGGCATTGCTGGATTTTGGCCAG
AGAGCTCAGAATGAGAAAGGAAGGGGAGTAGGAAAAGAAGAGTTCGTTTTTTAGAAAATT
TCCTCTTTTAAGGTAAATTTGAGCCAAGTGAGCATTCTAAAGTTACCCTGAAGAATGACA
TGAGTGAGACTTAGAAGCCAACTGCTCCTTCCTGCGCACAGCTTCTCCAGCAGGGGTGAC
ATGACTTGTCTGCTTCAGATATAGCAAAGGCCTGCCTTCCCCTCTGGTCAAAAGAGCATA
TGGGACCTTGAGCGGGCTCCGCTCAATAGCCAGGTATTCTGGCATTGGGTGAGCAATGCC
TGCCTTGCGTTGACGTGTCGCATTGCTTCCAAGGGTGAATACACTGTCCTGTGAATGCCC
TAAGACCCTACGCTGCATCTATGTATGTTCTTTCAGAGCACTGATGATCAAAACGGAAGA
CACACTCAAAGGTTTGACTGGTTGAGGTTCATTGGCTCAGTGGTGGGCACATGTGTATTT
TTATGTCTTTGTATGTAGTTCTACAAAATGCAGACTTCTTTCTGATGGATAAGACCTCAC
AACTGTGATGAATATCAATAAAGGGGGTACTGTTGGGGAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGCTGGCGTCCTGGGCCCCCATCCTGGGTTTCGTGGTGATGATGTCGCTGGACGTTGG
TCTGGGCTAGGGCTGAAAGGCTTCCGGACCCCAGGGAAGGCAGCACAGGCAAACCGCCAT
GGTTGGCTTCTGCAGGACCGCAAGCCTCTTTCTTCACATGAAAACATGCTTCCCTTCCCC
CTTTCATCTCATGACCTTGATTGACTGTGATTATAAGAAGACAGTCTTTTTAGTTTTCTT
TTGTGGGAGATAGTGGTTTTATTTGGAATTTCAAGTTGCCCCAGAACTATAGATTTTTGC
TTGGCCGCTAAATGGAATCGCTCTTCGGTGGGGTTACCCAGGACCTACAGATCAGGGAAA
TCTTTGCCTTTGTAACCTTCAGTCTCCCTCGCTAGACGCAATGCTGACTCCTCAAGGTCA
CTGACAGAAGCAAGCTACCAAGAGAGGCGTCTCCTAAGCATCCTTGCCTAGTGACTGGGC
GCAGAATGGCTAGGACAGCGCTCCTCCGTCCCTCCTGATCTTTCACTGCTGATCCCCCCA
TCCAGACTGGAGCTGGAGCATCCTGGACAAAGCACCCTGCTTGCCAAGGTCTAAGGAGGA
ACATACCTTCCTCTGCCTCCCCGCAGGGAGATGTGATGTGGGACGAGGCTCAGACAAAGG
GAAGCAAATCGGCTAGTCTCTCTCTCTCTCTTTTTTTAAGGCAAAGATTGACTCATGGAT
GTGAAGGGAATTAAAACCACTGTGAACGCACAGTGGGCCCTGTGAAAAGAGGGCAGAGCG
AAGCTTTGATCAGAGACCTCTGCTCTCTCTGAATTCCCAGAGCAACCTGGTTTGCCATGG
TTTTCAAATCCCCAGGTGTGTACTTTGATGAGTCCTTCATTTCTCTAAGACACTCGGGGA
CACCAGCAAACGGCTAGAACGCAAACCTTTCAGTTACTTGTGGCAGGAACCATGTAAGCT
AATTTATGTGGGTGAAAGATATTTGGAATCTGCACTGGATCCTTCTCCGTTGACCATTTG
GTACCTGTATCCTGACCCAGACCTCTTAAGCTACAGCAGGCATTGCTGGATTTTGGCCAG
AGAGCTCAGAATGAGAAAGGAAGGGGAGTAGGAAAAGAAGAGTTCGTTTTTTAGAAAATT
TCCTCTTTTAAGGTAAATTTGAGCCAAGTGAGCATTCTAAAGTTACCCTGAAGAATGACA
TGAGTGAGACTTAGAAGCCAACTGCTCCTTCCTGCGCACAGCTTCTCCAGCAGGGGTGAC
ATGACTTGTCTGCTTCAGATATAGCAAAGGCCTGCCTTCCCCTCTGGTCAAAAGAGCATA
TGGGACCTTGAGCGGGCTCCGCTCAATAGCCAGGTATTCTGGCATTGGGTGAGCAATGCC
TGCCTTGCGTTGACGTGTCGCATTGCTTCCAAGGGTGAATACACTGTCCTGTGAATGCCC
TAAGACCCTACGCTGCATCTATGTATGTTCTTTCAGAGCACTGATGATCAAAACGGAAGA
CACACTCAAAGGTTTGACTGGTTGAGGTTCATTGGCTCAGTGGTGGGCACATGTGTATTT
TTATGTCTTTGTATGTAGTTCTACAAAATGCAGACTTCTTTCTGATGGATAAGACCTCAC
AACTGTGATGAATATCAATAAAGGGGGTACTGTTGGGGAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               508-612, - strand, RNAz p=0.767556

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               508-612, - strand, RNAz p=0.767556

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-1659, gnl|bosTau2|chr19 (53478486-53476863)
               

               
               2-1659, gnl|Hg17|chr17 (68155386-68153683)
               

               
               2-1659, gnl|Mm7|chr11 (113355530-113353899)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1659, gnl|bosTau2|chr19 (53478486-53476863)
               

               
               2-1659, gnl|Hg17|chr17 (68155386-68153683)
               

               
               2-1659, gnl|Mm7|chr11 (113355530-113353899)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               ute (0.265569)
               

               
               ece (0.229305)
               

               
               jej (0.197844)
               

               
               col (0.195008)
               

               
               eye (0.170503)
               

               
               lun (0.150489)
               

               
               pla (0.133672)
               

               
               med (0.116252)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (0.265569)
               

               
               ece (0.229305)
               

               
               jej (0.197844)
               

               
               col (0.195008)
               

               
               eye (0.170503)
               

               
               lun (0.150489)
               

               
               pla (0.133672)
               

               
               med (0.116252)

	2-1659, gnl\|bosTau2\|chr19 (53478486-53476863)
	2-1659, gnl\|Hg17\|chr17 (68155386-68153683)
	2-1659, gnl\|Mm7\|chr11 (113355530-113353899)

	ute (0.265569)
	ece (0.229305)
	jej (0.197844)
	col (0.195008)
	eye (0.170503)
	lun (0.150489)
	pla (0.133672)
	med (0.116252)