Ss1.1-rjej30b_f24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACGCCTACTCCGTGACTGGGGCCAAGCAGGTGAACTACCAGGGCCAGATGGTGAACCTGA TCCGGATGCGGAACCCCTGGGGCGAGGTGGAGTGGACGGGAGCCTGGAGTGATGGCTCCT CGGAGTGGAACGGCGTGGACCCCTACCAGCGGGATCAGCTCCGGGTCCGGATGGAGGATG GGGAGTTCTGGATGTCCTTCCGAGACTTCTTGCGTGAGTTCACCCGCCTGGAGATCTGCA ACCTGACGCCCGACGCGCTCAAGAGCCAGAGGGTCCGCAACTGGAACACCACCCTCTACG AGGGCACCTGGCGGCGGGGGAGCACCGCGGGGGGCTGCCGCAACTACCCAGCCACCTTCT GGGTGAACCCCCAGTTCAAGATCCGGCTGGAGGAGACGGATGACCCAGAGGACGACTACG GGGGCCGTGAGTCGGGCTGCAGCTTCGTGCTCGCCCTCATGCAGAAACACCGCCGCCGGG AGCGCCGATTCGGCCGGGACATGGAGACCATCGGCTTTGCCGTCTATGAGGTCCCTCCGG AGCTGGTGGGCCAGCCGGTGCACCTGAAGCGGGACTTCTTCCTGGCCAACGCCTCTCGGG CCCGGTCCGAGCAGTTCATCAACCTGCGGGAGGTCAGTACCCGCTTCCGCCTGCCGCCCG GCGAGTACGTGGTGGTGCCTTCCACCTTCGAGCCCAACAAGGAGGGCGACTTTGTGCTGC GTTTCTTCTCAGAGAAGAAAGCCGGGACCCAAGAGCTGGACGACCAGGTCCAGGCCATTC TCCCCGACGAGCAAGTGCTCTCGGAAGAGGAGATTGATGAGAACTTCAAAGCGCTCTTCA GACAGCTGGCAGGGGAGGACATGGAGATCAGCGTCAGGGAGCTGCGCACCATCCTCAACA GGATCATCAGCAAACACAAAGACCTGCGGACCAAGGGCTTCAGCCTGGAGTCCTGCCGCA GCATGGTCAACCTCATGGACCGTGATGGCAACGGGAAGCTGGGCCTGGTGGAATTCAACA TCCTGTGGAACCGCATCCGGAATTACCTGTCCATCTTCCGGAAGTTCGACTTGGACAAGT CAGGCAGCATGAGCGCCTACGAGATGCGGATGGCCATCGAGTCTGCAGGCTTCAAGCTCA ACAAGAAGCTGTTTGAGCTCATCATCACCCGCTACTCGGAGCCCGACCTGGCCGTGGACT TCGACAACTTCGTGTGCTGCCTGGTGCGGCTGGAGACCATGTTCCGATTTTTCAAGACTC TGGACACAGATCTGGATGGAGTTGTGACCTTTGACTTGTTTAAGTGGTTGCAGCTGACCA TGTTTGCATGAGGTGGGGCTCGGGCCCCTTGCTGTGCTCTTCTGCCCTCGTCTGCCAAGC CATGCCTTCCCGCCATGCCACACCAGGCCACACCAGCTGCAAGTGCCTTCCTGGGAGCAG GAGGCGGCCTCGTCCTCCTGTCCCCTCATCTCCCACCGCCGTGGTTCATTCGCTCTGGGC AGAGCTGTGTGGCCCTCCCTGCCTCCACTGGCCGCGGGCTCAGATGGACTGCCCCAGCCC CTCTGGCCGCCGCACCAGGAAGGCAGCTTTTGCTTGTTCCTGCCTAGGATGGGGCTTCTG GGGCTTCGGGAAGACTGACAGCCCCAGGCCTCTGACATCCTGATGTGTCCTCACCCCTCC TCCACCTCCAGGGGCCACCCATCCAGCCCCCGCCCGCGGCCTCACCTGCAGACTTTACAC GATAACCACTAGCTCTGCACAGTCTGCGGTCTAGACGTGCAGAGCCCCTCCCTGGGGGCT GGGAACGCCTGTTCCTTCCTGTGCAAAAGCCGATGCCCCTCTCTGCCCCCCAGCCCTGTC CCCACCTGCCAACTAGGGGTGGCCTGGCCTGGGAGGTGGCCAGGCTTCCTGGCCCCCCCC TTCCTTTTTTATATTGGTGATTTTAAAGGGGACTCTGTGGGGACTGATTATCAGTTGTGA GGGTGCCAGAGGCACCCGGACGTGGCGGGGTTGTGGGGACATCTCATGTTTCCATGCAGA GAAGCCCCAAGTAATAAAGGAAAAGGCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACGCCTACTCCGTGACTGGGGCCAAGCAGGTGAACTACCAGGGCCAGATGGTGAACCTGA TCCGGATGCGGAACCCCTGGGGCGAGGTGGAGTGGACGGGAGCCTGGAGTGATGGCTCCT CGGAGTGGAACGGCGTGGACCCCTACCAGCGGGATCAGCTCCGGGTCCGGATGGAGGATG GGGAGTTCTGGATGTCCTTCCGAGACTTCTTGCGTGAGTTCACCCGCCTGGAGATCTGCA ACCTGACGCCCGACGCGCTCAAGAGCCAGAGGGTCCGCAACTGGAACACCACCCTCTACG AGGGCACCTGGCGGCGGGGGAGCACCGCGGGGGGCTGCCGCAACTACCCAGCCACCTTCT GGGTGAACCCCCAGTTCAAGATCCGGCTGGAGGAGACGGATGACCCAGAGGACGACTACG GGGGCCGTGAGTCGGGCTGCAGCTTCGTGCTCGCCCTCATGCAGAAACACCGCCGCCGGG AGCGCCGATTCGGCCGGGACATGGAGACCATCGGCTTTGCCGTCTATGAGGTCCCTCCGG AGCTGGTGGGCCAGCCGGTGCACCTGAAGCGGGACTTCTTCCTGGCCAACGCCTCTCGGG CCCGGTCCGAGCAGTTCATCAACCTGCGGGAGGTCAGTACCCGCTTCCGCCTGCCGCCCG GCGAGTACGTGGTGGTGCCTTCCACCTTCGAGCCCAACAAGGAGGGCGACTTTGTGCTGC GTTTCTTCTCAGAGAAGAAAGCCGGGACCCAAGAGCTGGACGACCAGGTCCAGGCCATTC TCCCCGACGAGCAAGTGCTCTCGGAAGAGGAGATTGATGAGAACTTCAAAGCGCTCTTCA GACAGCTGGCAGGGGAGGACATGGAGATCAGCGTCAGGGAGCTGCGCACCATCCTCAACA GGATCATCAGCAAACACAAAGACCTGCGGACCAAGGGCTTCAGCCTGGAGTCCTGCCGCA GCATGGTCAACCTCATGGACCGTGATGGCAACGGGAAGCTGGGCCTGGTGGAATTCAACA TCCTGTGGAACCGCATCCGGAATTACCTGTCCATCTTCCGGAAGTTCGACTTGGACAAGT CAGGCAGCATGAGCGCCTACGAGATGCGGATGGCCATCGAGTCTGCAGGCTTCAAGCTCA ACAAGAAGCTGTTTGAGCTCATCATCACCCGCTACTCGGAGCCCGACCTGGCCGTGGACT TCGACAACTTCGTGTGCTGCCTGGTGCGGCTGGAGACCATGTTCCGATTTTTCAAGACTC TGGACACAGATCTGGATGGAGTTGTGACCTTTGACTTGTTTAAGTGGTTGCAGCTGACCA TGTTTGCATGAGGTGGGGCTCGGGCCCCTTGCTGTGCTCTTCTGCCCTCGTCTGCCAAGC CATGCCTTCCCGCCATGCCACACCAGGCCACACCAGCTGCAAGTGCCTTCCTGGGAGCAG GAGGCGGCCTCGTCCTCCTGTCCCCTCATCTCCCACCGCCGTGGTTCATTCGCTCTGGGC AGAGCTGTGTGGCCCTCCCTGCCTCCACTGGCCGCGGGCTCAGATGGACTGCCCCAGCCC CTCTGGCCGCCGCACCAGGAAGGCAGCTTTTGCTTGTTCCTGCCTAGGATGGGGCTTCTG GGGCTTCGGGAAGACTGACAGCCCCAGGCCTCTGACATCCTGATGTGTCCTCACCCCTCC TCCACCTCCAGGGGCCACCCATCCAGCCCCCGCCCGCGGCCTCACCTGCAGACTTTACAC GATAACCACTAGCTCTGCACAGTCTGCGGTCTAGACGTGCAGAGCCCCTCCCTGGGGGCT GGGAACGCCTGTTCCTTCCTGTGCAAAAGCCGATGCCCCTCTCTGCCCCCCAGCCCTGTC CCCACCTGCCAACTAGGGGTGGCCTGGCCTGGGAGGTGGCCAGGCTTCCTGGCCCCCCCC TTCCTTTTTTATATTGGTGATTTTAAAGGGGACTCTGTGGGGACTGATTATCAGTTGTGA GGGTGCCAGAGGCACCCGGACGTGGCGGGGTTGTGGGGACATCTCATGTTTCCATGCAGA GAAGCCCCAAGTAATAAAGGAAAAGGCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 11-115, gnl|bosTau2|chr29 (34326566-34326670) | |
| 11-115, gnl|Hg17|chr11 (64711880-64712087) | |
| 11-115, gnl|Mm7|chr19 (5903586-5903482) | |
| 190-348, gnl|bosTau2|chr23 (17617078-17616920) | |
| 190-348, gnl|Hg17|chr6 (44252552-44252710) | |
| 190-348, gnl|Mm7|chr17 (43768637-43768476) | |
| 349-532, gnl|bosTau2|chr29 (34339427-34339613) | |
| 349-532, gnl|Hg17|chr11 (64728727-64728907) | |
| 349-532, gnl|Mm7|chr19 (5892675-5892495) | |
| 541-751, gnl|bosTau2|chr29 (34343304-34343517) | |
| 541-751, gnl|canFam2|chr18 (55013397-55013174) | |
| 541-751, gnl|danRer3|chr12 (7618526-7618303) | |
| 541-751, gnl|dasNov1|scaffold_52291 (3887-4107) | |
| 541-751, gnl|echTel1|scaffold_222925 (71-295) | |
| 541-751, gnl|fr1|chrUn (129698682-129698459) | |
| 541-751, gnl|galGal2|chr3 (26629496-26629276) | |
| 541-751, gnl|hg17|chr11 (64730508-64730731) | |
| 541-751, gnl|Hg17|chr11 (64730508-64730721) | |
| 541-751, gnl|loxAfr1|scaffold_43756 (39680-39457) | |
| 541-751, gnl|mm7|chr19 (5889697-5889477) | |
| 541-751, gnl|Mm7|chr19 (5889695-5889485) | |
| 541-751, gnl|monDom2|scaffold_107 (3815897-3815674) | |
| 541-751, gnl|oryCun1|scaffold_152508 (163-386) | |
| 541-751, gnl|panTro1|chr9 (65972951-65973174) | |
| 541-751, gnl|rheMac2|chr14 (9229566-9229343) | |
| 541-751, gnl|rn3|chr1 (208780422-208780202) | |
| 541-751, gnl|tetNig1|chrUn_random (21901954-21902177) | |
| 541-751, gnl|xenTro1|scaffold_251 (1332687-1332476) | |
| 560-738, gnl|bosTau2|chr10 (17226391-17226569) | |
| 560-738, gnl|canFam2|chr30 (12365999-12366137) | |
| 560-738, gnl|danRer3|chr20 (26664132-26664270) | |
| 560-738, gnl|dasNov1|scaffold_214027 (3994-3853) | |
| 560-738, gnl|echTel1|scaffold_232875 (15573-15688) | |
| 560-738, gnl|fr1|chrUn (181869097-181868959) | |
| 560-738, gnl|galGal2|chr5 (22918011-22918149) | |
| 560-738, gnl|hg17|chr15 (40482277-40482415) | |
| 560-738, gnl|Hg17|chr15 (40482301-40482479) | |
| 560-738, gnl|loxAfr1|scaffold_4375 (18822-18687) | |
| 560-738, gnl|mm7|chr2 (120236707-120236845) | |
| 560-738, gnl|Mm7|chr2 (120236731-120236909) | |
| 560-738, gnl|monDom2|scaffold_53 (12146867-12146727) | |
| 560-738, gnl|oryCun1|scaffold_148722 (8096-8233) | |
| 560-738, gnl|panTro1|chr16 (40462816-40462954) | |
| 560-738, gnl|rheMac2|chr7 (20832754-20832892) | |
| 560-738, gnl|rn3|chr3 (106884779-106884917) | |
| 560-738, gnl|tetNig1|chr10 (11780281-11780419) | |
| 560-738, gnl|xenTro1|scaffold_117 (962967-962829) | |
| 843-1337, gnl|bosTau2|chr18 (24710446-24709952) | |
| 843-1337, gnl|Hg17|chr16 (54158428-54158922) | |
| 843-1337, gnl|Mm7|chr8 (91494990-91495486) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 11-115, gnl|bosTau2|chr29 (34326566-34326670) | |
| 11-115, gnl|Hg17|chr11 (64711880-64712087) | |
| 11-115, gnl|Mm7|chr19 (5903586-5903482) | |
| 190-348, gnl|bosTau2|chr23 (17617078-17616920) | |
| 190-348, gnl|Hg17|chr6 (44252552-44252710) | |
| 190-348, gnl|Mm7|chr17 (43768637-43768476) | |
| 349-532, gnl|bosTau2|chr29 (34339427-34339613) | |
| 349-532, gnl|Hg17|chr11 (64728727-64728907) | |
| 349-532, gnl|Mm7|chr19 (5892675-5892495) | |
| 541-751, gnl|bosTau2|chr29 (34343304-34343517) | |
| 541-751, gnl|canFam2|chr18 (55013397-55013174) | |
| 541-751, gnl|danRer3|chr12 (7618526-7618303) | |
| 541-751, gnl|dasNov1|scaffold_52291 (3887-4107) | |
| 541-751, gnl|echTel1|scaffold_222925 (71-295) | |
| 541-751, gnl|fr1|chrUn (129698682-129698459) | |
| 541-751, gnl|galGal2|chr3 (26629496-26629276) | |
| 541-751, gnl|hg17|chr11 (64730508-64730731) | |
| 541-751, gnl|Hg17|chr11 (64730508-64730721) | |
| 541-751, gnl|loxAfr1|scaffold_43756 (39680-39457) | |
| 541-751, gnl|mm7|chr19 (5889697-5889477) | |
| 541-751, gnl|Mm7|chr19 (5889695-5889485) | |
| 541-751, gnl|monDom2|scaffold_107 (3815897-3815674) | |
| 541-751, gnl|oryCun1|scaffold_152508 (163-386) | |
| 541-751, gnl|panTro1|chr9 (65972951-65973174) | |
| 541-751, gnl|rheMac2|chr14 (9229566-9229343) | |
| 541-751, gnl|rn3|chr1 (208780422-208780202) | |
| 541-751, gnl|tetNig1|chrUn_random (21901954-21902177) | |
| 541-751, gnl|xenTro1|scaffold_251 (1332687-1332476) | |
| 560-738, gnl|bosTau2|chr10 (17226391-17226569) | |
| 560-738, gnl|canFam2|chr30 (12365999-12366137) | |
| 560-738, gnl|danRer3|chr20 (26664132-26664270) | |
| 560-738, gnl|dasNov1|scaffold_214027 (3994-3853) | |
| 560-738, gnl|echTel1|scaffold_232875 (15573-15688) | |
| 560-738, gnl|fr1|chrUn (181869097-181868959) | |
| 560-738, gnl|galGal2|chr5 (22918011-22918149) | |
| 560-738, gnl|hg17|chr15 (40482277-40482415) | |
| 560-738, gnl|Hg17|chr15 (40482301-40482479) | |
| 560-738, gnl|loxAfr1|scaffold_4375 (18822-18687) | |
| 560-738, gnl|mm7|chr2 (120236707-120236845) | |
| 560-738, gnl|Mm7|chr2 (120236731-120236909) | |
| 560-738, gnl|monDom2|scaffold_53 (12146867-12146727) | |
| 560-738, gnl|oryCun1|scaffold_148722 (8096-8233) | |
| 560-738, gnl|panTro1|chr16 (40462816-40462954) | |
| 560-738, gnl|rheMac2|chr7 (20832754-20832892) | |
| 560-738, gnl|rn3|chr3 (106884779-106884917) | |
| 560-738, gnl|tetNig1|chr10 (11780281-11780419) | |
| 560-738, gnl|xenTro1|scaffold_117 (962967-962829) | |
| 843-1337, gnl|bosTau2|chr18 (24710446-24709952) | |
| 843-1337, gnl|Hg17|chr16 (54158428-54158922) | |
| 843-1337, gnl|Mm7|chr8 (91494990-91495486) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| nco (0.485201) | |
| amn (0.417711) | |
| eep (0.367692) | |
| jej (0.296765) | |
| fli (0.202881) | |
| nep (0.183925) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| pla (0.133672) | |
| cly (0.120642) | |
| eru (0.120048) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| cty (0.10408) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.485201) | |
| amn (0.417711) | |
| eep (0.367692) | |
| jej (0.296765) | |
| fli (0.202881) | |
| nep (0.183925) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| pla (0.133672) | |
| cly (0.120642) | |
| eru (0.120048) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| cty (0.10408) |