Ss1.1-rjej30b_g21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCCCCTCACGCTTCGAGAACATGCCTGTGAGTCTCTTGGTCCAGGTTTCGGCGGAGATCT CGCTCTTCTGTCCGCACGCTCCCCTCACGCTGATTTCGGATCGCAGAGGGCACTCATTTG CCCTTCGCGCTTCCCAGGACATTAACTACGGGGACCGCGGAGGCCCGCGGGGTCCCCTGC ATAGACGGGAGCGGAGAGGAGATAAGATGGCGGCCCAGCTGCGCAGACGCGGTGACGACG TCCCTTCGAGAACATGCCTCTCGCAAAGGATCTCCTTCATCCCTCTCCAGAAGAGGAGAA GAGGAAACACAAGAAGAAGCGCCTGGTGCAGAGCCCCAATTCCTATTTCATGGATGTGAA ATGCCCAGGATGCTATAAAATCACCACCGTCTTTAGCCATGCACAAACAGTAGTTTTGTG TGTTGGCTGCTCTACTGTCCTCTGCCAGCCTACAGGAGGAAAAGCAAGGCTTACAGAAGG ATGCTCCTTCAGACGGAAGCAGCACTAAAAGCACCCTGAGTCAAGATGAATGGGAAATGA TCCCAATAAACACGTTTTGGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAATTCAGGGGCATCCAGAAGAGTGGACTCTAGAGTCATTTGGGGCAATT TGTGAAATAAAATGAAGGCAGTTTCCAAGTCAAAAGTCCACGGTGCTGAATATAAGGACT CCTTACCTAGAAAGAGGAAAGCTGTTGATGCCAACACCGCAAAGAGGGTAAAGAGGATCT GGTAAGAACCCATGAACTTCTGGAGGACACCTGAATCTTTACATTGATCTGTGTATTAGC AGAACAAGAGAAGATAATAGTTATTTCATACATCGGGACAGACGTCACATTTACAAAACT TGTGTGACCCTAAGAGTTAGCTAAAGTACTCAGGACCCAGCCCTCCAGGAAATTCTTCTG CTTCTTAGCAGAGAAAAAGAGGTGAACTGTACTTGGCTTCTCCACCTCTTTGGCTATCTC TTGTGTAATAAACTAAATTCTTGAGCCTCTCGTCGGCTTACAAAAGAGTATTTAAATTCT CTGCCACTTTAAAAATGATTGTTGGCTTTCCTGCACACTTAACTCCTAGTGACATGCTGC CAAATTTGTGACAATCTATGGTGATTCAACTTTCAATTTTAACCCCTTTAGCCTGAAACA TTTCTTTGGATCATCATGACCGCTTGTCCACTGGTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCCCCTCACGCTTCGAGAACATGCCTGTGAGTCTCTTGGTCCAGGTTTCGGCGGAGATCT CGCTCTTCTGTCCGCACGCTCCCCTCACGCTGATTTCGGATCGCAGAGGGCACTCATTTG CCCTTCGCGCTTCCCAGGACATTAACTACGGGGACCGCGGAGGCCCGCGGGGTCCCCTGC ATAGACGGGAGCGGAGAGGAGATAAGATGGCGGCCCAGCTGCGCAGACGCGGTGACGACG TCCCTTCGAGAACATGCCTCTCGCAAAGGATCTCCTTCATCCCTCTCCAGAAGAGGAGAA GAGGAAACACAAGAAGAAGCGCCTGGTGCAGAGCCCCAATTCCTATTTCATGGATGTGAA ATGCCCAGGATGCTATAAAATCACCACCGTCTTTAGCCATGCACAAACAGTAGTTTTGTG TGTTGGCTGCTCTACTGTCCTCTGCCAGCCTACAGGAGGAAAAGCAAGGCTTACAGAAGG ATGCTCCTTCAGACGGAAGCAGCACTAAAAGCACCCTGAGTCAAGATGAATGGGAAATGA TCCCAATAAACACGTTTTGGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAATTCAGGGGCATCCAGAAGAGTGGACTCTAGAGTCATTTGGGGCAATT TGTGAAATAAAATGAAGGCAGTTTCCAAGTCAAAAGTCCACGGTGCTGAATATAAGGACT CCTTACCTAGAAAGAGGAAAGCTGTTGATGCCAACACCGCAAAGAGGGTAAAGAGGATCT GGTAAGAACCCATGAACTTCTGGAGGACACCTGAATCTTTACATTGATCTGTGTATTAGC AGAACAAGAGAAGATAATAGTTATTTCATACATCGGGACAGACGTCACATTTACAAAACT TGTGTGACCCTAAGAGTTAGCTAAAGTACTCAGGACCCAGCCCTCCAGGAAATTCTTCTG CTTCTTAGCAGAGAAAAAGAGGTGAACTGTACTTGGCTTCTCCACCTCTTTGGCTATCTC TTGTGTAATAAACTAAATTCTTGAGCCTCTCGTCGGCTTACAAAAGAGTATTTAAATTCT CTGCCACTTTAAAAATGATTGTTGGCTTTCCTGCACACTTAACTCCTAGTGACATGCTGC CAAATTTGTGACAATCTATGGTGATTCAACTTTCAATTTTAACCCCTTTAGCCTGAAACA TTTCTTTGGATCATCATGACCGCTTGTCCACTGGTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 91-208, + strand, RNAz p=0.723644 | |
| 269-576, - strand, RNAz p=0.982996 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 91-208, + strand, RNAz p=0.723644 | |
| 269-576, - strand, RNAz p=0.982996 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 14-228, gnl|bosTau2|chr3 (8168808-8169023) | |
| 14-228, gnl|Hg17|chr1 (150776337-150776552) | |
| 14-228, gnl|Mm7|chr3 (90344357-90344147) | |
| 229-588, gnl|bosTau2|chr17 (21004777-21004418) | |
| 233-576, gnl|bosTau2|chr14 (13430887-13430550) | |
| 233-576, gnl|Hg17|chr7 (92944063-92943721) | |
| 233-576, gnl|Mm7|chr15 (99692079-99691738) | |
| 367-480, gnl|bosTau2|chr10 (31051662-31051549) | |
| 367-480, gnl|canFam2|chr30 (30747414-30747600) | |
| 367-480, gnl|danRer3|chrNA (140345931-140345771) | |
| 367-480, gnl|dasNov1|scaffold_1490 (106396-106212) | |
| 367-480, gnl|echTel1|scaffold_288449 (89952-90137) | |
| 367-480, gnl|fr1|chrUn (157713304-157713165) | |
| 367-480, gnl|galGal2|chr10 (4929957-4929810) | |
| 367-480, gnl|hg17|chr15 (61234857-61235045) | |
| 367-480, gnl|Hg17|chr15 (61234985-61234872) | |
| 367-480, gnl|loxAfr1|scaffold_3344 (61469-61300) | |
| 367-480, gnl|mm7|chr9 (66979174-66978982) | |
| 367-480, gnl|Mm7|chr9 (66979051-66979164) | |
| 367-480, gnl|monDom2|scaffold_12 (50632302-50632111) | |
| 367-480, gnl|oryCun1|scaffold_192804 (101715-101542) | |
| 367-480, gnl|panTro1|chr16 (61691447-61691635) | |
| 367-480, gnl|rheMac2|chr7 (41528686-41528868) | |
| 367-480, gnl|rn3|chr8 (71280096-71279910) | |
| 367-480, gnl|tetNig1|chr21_random (2128967-2128819) | |
| 367-480, gnl|xenTro1|scaffold_62 (1156336-1156524) | |
| 670-1169, gnl|bosTau2|chr3 (8171404-8171908) | |
| 670-1169, gnl|Hg17|chr1 (150780571-150781930) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 14-228, gnl|bosTau2|chr3 (8168808-8169023) | |
| 14-228, gnl|Hg17|chr1 (150776337-150776552) | |
| 14-228, gnl|Mm7|chr3 (90344357-90344147) | |
| 229-588, gnl|bosTau2|chr17 (21004777-21004418) | |
| 233-576, gnl|bosTau2|chr14 (13430887-13430550) | |
| 233-576, gnl|Hg17|chr7 (92944063-92943721) | |
| 233-576, gnl|Mm7|chr15 (99692079-99691738) | |
| 367-480, gnl|bosTau2|chr10 (31051662-31051549) | |
| 367-480, gnl|canFam2|chr30 (30747414-30747600) | |
| 367-480, gnl|danRer3|chrNA (140345931-140345771) | |
| 367-480, gnl|dasNov1|scaffold_1490 (106396-106212) | |
| 367-480, gnl|echTel1|scaffold_288449 (89952-90137) | |
| 367-480, gnl|fr1|chrUn (157713304-157713165) | |
| 367-480, gnl|galGal2|chr10 (4929957-4929810) | |
| 367-480, gnl|hg17|chr15 (61234857-61235045) | |
| 367-480, gnl|Hg17|chr15 (61234985-61234872) | |
| 367-480, gnl|loxAfr1|scaffold_3344 (61469-61300) | |
| 367-480, gnl|mm7|chr9 (66979174-66978982) | |
| 367-480, gnl|Mm7|chr9 (66979051-66979164) | |
| 367-480, gnl|monDom2|scaffold_12 (50632302-50632111) | |
| 367-480, gnl|oryCun1|scaffold_192804 (101715-101542) | |
| 367-480, gnl|panTro1|chr16 (61691447-61691635) | |
| 367-480, gnl|rheMac2|chr7 (41528686-41528868) | |
| 367-480, gnl|rn3|chr8 (71280096-71279910) | |
| 367-480, gnl|tetNig1|chr21_random (2128967-2128819) | |
| 367-480, gnl|xenTro1|scaffold_62 (1156336-1156524) | |
| 670-1169, gnl|bosTau2|chr3 (8171404-8171908) | |
| 670-1169, gnl|Hg17|chr1 (150780571-150781930) |
| Expressed library(ies): 75 entry(ies) | More info |
| Expressed library(ies): 75 entry(ies) | Help | Less info |
| sto (5.75436) | |
| eje (5.73236) | |
| nca (5.47495) | |
| elu (5.39499) | |
| lnt (4.55386) | |
| fty (4.22015) | |
| csp (3.70729) | |
| cga (3.34915) | |
| fce (3.2591) | |
| nco (3.23468) | |
| cag (3.17508) | |
| ton (2.9835) | |
| ece (2.98097) | |
| eru (2.64106) | |
| nep (2.57495) | |
| nlu (2.49185) | |
| med (2.44129) | |
| cmu (2.42311) | |
| ese (2.40354) | |
| cbr (2.30356) | |
| pty (2.28343) | |
| fli (2.23169) | |
| mcp (2.21843) | |
| eye (2.21654) | |
| ecc (2.18567) | |
| amn (2.08855) | |
| nbm (2.08582) | |
| jca (1.93732) | |
| cly (1.93027) | |
| ebs (1.89282) | |
| jej (1.87951) | |
| nje (1.82512) | |
| nmm (1.72643) | |
| cov (1.71799) | |
| eep (1.59333) | |
| col (1.56006) | |
| nms (1.49701) | |
| fbs (1.40277) | |
| fcc (1.38449) | |
| hyp (1.14269) | |
| mas (1.05152) | |
| fhi (1.01747) | |
| ute (0.796707) | |
| csk (0.70373) | |
| ill (0.702371) | |
| sin (0.524843) | |
| pgl (0.473934) | |
| cli (0.458435) | |
| lin (0.436808) | |
| spl (0.429553) | |
| hlv (0.417769) | |
| kid (0.389206) | |
| sug (0.381874) | |
| gul (0.355177) | |
| duo (0.345602) | |
| sme (0.305437) | |
| eli (0.303628) | |
| ski (0.29347) | |
| cte (0.29274) | |
| cst (0.280073) | |
| pla (0.267344) | |
| thg (0.253582) | |
| bla (0.248694) | |
| cbe (0.239234) | |
| mgp (0.230681) | |
| cbl (0.229595) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| cut (0.169924) | |
| cki (0.165235) | |
| bfe (0.149858) | |
| liv (0.146284) | |
| lyg (0.133103) | |
| cty (0.10408) | |
| ldo (0.0970026) |
| Expressed library(ies): 75 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sto (5.75436) | |
| eje (5.73236) | |
| nca (5.47495) | |
| elu (5.39499) | |
| lnt (4.55386) | |
| fty (4.22015) | |
| csp (3.70729) | |
| cga (3.34915) | |
| fce (3.2591) | |
| nco (3.23468) | |
| cag (3.17508) | |
| ton (2.9835) | |
| ece (2.98097) | |
| eru (2.64106) | |
| nep (2.57495) | |
| nlu (2.49185) | |
| med (2.44129) | |
| cmu (2.42311) | |
| ese (2.40354) | |
| cbr (2.30356) | |
| pty (2.28343) | |
| fli (2.23169) | |
| mcp (2.21843) | |
| eye (2.21654) | |
| ecc (2.18567) | |
| amn (2.08855) | |
| nbm (2.08582) | |
| jca (1.93732) | |
| cly (1.93027) | |
| ebs (1.89282) | |
| jej (1.87951) | |
| nje (1.82512) | |
| nmm (1.72643) | |
| cov (1.71799) | |
| eep (1.59333) | |
| col (1.56006) | |
| nms (1.49701) | |
| fbs (1.40277) | |
| fcc (1.38449) | |
| hyp (1.14269) | |
| mas (1.05152) | |
| fhi (1.01747) | |
| ute (0.796707) | |
| csk (0.70373) | |
| ill (0.702371) | |
| sin (0.524843) | |
| pgl (0.473934) | |
| cli (0.458435) | |
| lin (0.436808) | |
| spl (0.429553) | |
| hlv (0.417769) | |
| kid (0.389206) | |
| sug (0.381874) | |
| gul (0.355177) | |
| duo (0.345602) | |
| sme (0.305437) | |
| eli (0.303628) | |
| ski (0.29347) | |
| cte (0.29274) | |
| cst (0.280073) | |
| pla (0.267344) | |
| thg (0.253582) | |
| bla (0.248694) | |
| cbe (0.239234) | |
| mgp (0.230681) | |
| cbl (0.229595) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| cut (0.169924) | |
| cki (0.165235) | |
| bfe (0.149858) | |
| liv (0.146284) | |
| lyg (0.133103) | |
| cty (0.10408) | |
| ldo (0.0970026) |