Non-Coding RNA Search

Ss1.1-rjej30b_g6.5

Sequence:


               
               CCTCTCCTGAATGGCCACATGTCTAAGGACAGTCTTTGTTGTTTTGTCCCACATCACAGG
CTATCTGGCACAGTTAACTGAGCATGTCTCTCCCCCATGTTATAGTGTGAGTTCTGAGGG
CATGGGCTGGGCCTCACTCCTCCCCCAGAGGCCTTGTAGCCCACAGCCCTCCTAGCAGGT
GCTCAGTCCAGCTTCATTTGGGAAACTACTTTGATAGGTTGGGCCTTCCCCTCTCTGGTC
TCCCTGATAGGATTGTAGACCCAGAGATGACTCTCACCCAAACCCACTTGCTAGTTTTGT
GAACTAAGCAGGAGACAATTTAAATGAATGCACACCCATAGGAGCACACACAAGGGAGCT
AGTTTGCAGCTGGCCCTGGGTTCTAAGGTTGTAGTGATTCCTCTCAAGCCCAGAGCAACT
GACATGCCCACCTTTGCTTCCCGAAGCTTAACGCCTGCCCTGCCCTGCCTGTTCCTGGCT
CTGCTTTGCTGCCTGGGCCGTCTTGCTCCCTCTCCCACAGCCTCTCCCCTGTTGGTGGAT
TATTTCTTGTGCTCCCAGGAGCTCAGCAAAGTCCTGGCTGTTTGGGTTTTGTGGCCTAGT
GCTAGTCTCACCCAAAAGCAATTTACTAGGAAGTAAACATTGTCATTTTTTTTTCTGGAT
GATCAGAAAAGCAATTCTGTATATCTGTTGTCCATCCTGTGATTTTTTTAAATATATATT
TTATATCTTTTGTTAAAATTTTTTTGCTTCATTCAGAATGTTGTCAGTAATAATAAAATT
GTCAGTGGGGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCTCCTGAATGGCCACATGTCTAAGGACAGTCTTTGTTGTTTTGTCCCACATCACAGG
CTATCTGGCACAGTTAACTGAGCATGTCTCTCCCCCATGTTATAGTGTGAGTTCTGAGGG
CATGGGCTGGGCCTCACTCCTCCCCCAGAGGCCTTGTAGCCCACAGCCCTCCTAGCAGGT
GCTCAGTCCAGCTTCATTTGGGAAACTACTTTGATAGGTTGGGCCTTCCCCTCTCTGGTC
TCCCTGATAGGATTGTAGACCCAGAGATGACTCTCACCCAAACCCACTTGCTAGTTTTGT
GAACTAAGCAGGAGACAATTTAAATGAATGCACACCCATAGGAGCACACACAAGGGAGCT
AGTTTGCAGCTGGCCCTGGGTTCTAAGGTTGTAGTGATTCCTCTCAAGCCCAGAGCAACT
GACATGCCCACCTTTGCTTCCCGAAGCTTAACGCCTGCCCTGCCCTGCCTGTTCCTGGCT
CTGCTTTGCTGCCTGGGCCGTCTTGCTCCCTCTCCCACAGCCTCTCCCCTGTTGGTGGAT
TATTTCTTGTGCTCCCAGGAGCTCAGCAAAGTCCTGGCTGTTTGGGTTTTGTGGCCTAGT
GCTAGTCTCACCCAAAAGCAATTTACTAGGAAGTAAACATTGTCATTTTTTTTTCTGGAT
GATCAGAAAAGCAATTCTGTATATCTGTTGTCCATCCTGTGATTTTTTTAAATATATATT
TTATATCTTTTGTTAAAATTTTTTTGCTTCATTCAGAATGTTGTCAGTAATAATAAAATT
GTCAGTGGGGAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               93-202, - strand, RNAz p=0.586041

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               93-202, - strand, RNAz p=0.586041

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               93-788, gnl|bosTau2|chr3 (2862084-2862779)
               

               
               93-788, gnl|Hg17|chr1 (163754437-163753740)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               93-788, gnl|bosTau2|chr3 (2862084-2862779)
               

               
               93-788, gnl|Hg17|chr1 (163754437-163753740)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               duo (0.864006)
               

               
               cje (0.826173)
               

               
               col (0.780031)
               

               
               rec (0.346141)
               

               
               tbr (0.308356)
               

               
               jej (0.296765)
               

               
               sin (0.174948)
               

               
               ssp (0.13552)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.864006)
               

               
               cje (0.826173)
               

               
               col (0.780031)
               

               
               rec (0.346141)
               

               
               tbr (0.308356)
               

               
               jej (0.296765)
               

               
               sin (0.174948)
               

               
               ssp (0.13552)

	93-788, gnl\|bosTau2\|chr3 (2862084-2862779)
	93-788, gnl\|Hg17\|chr1 (163754437-163753740)

	duo (0.864006)
	cje (0.826173)
	col (0.780031)
	rec (0.346141)
	tbr (0.308356)
	jej (0.296765)
	sin (0.174948)
	ssp (0.13552)