Ss1.1-rjej30b_j11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCAGGTGCTTGATATGCTGGCCAAAGGATCTGAATGCTTTCTCTTTACTTGAGGACAACC GACAGCGAAGGTTCTGGCCTGGGCGTGTGCTAAATGCAGAGCTATCGGATGGGCCCAGAT GTCACGGGCCCTGCCTCACTGCCCCCCAGGTGACAGCCGTGTGGAAAACCCAGGTGCAAA GAACTTTGGGTGCTCCCCTGAAAGGAGAAGGAGGAAGAGAGAAAGCAGTGCTGCTCCCAA CGGCAGAGCAGGGGTCTTCAGGGCTTTTTGCTAAGGGCCAGAACCTAAGAGGCCAAGAGA CCAGTGGGAGGCCAAGGAAAGAGGCTAAGGACTTCGTCGTCAGAAACGTATCCCAACCAG GAACAGAGGCATGGACTTCAGTGAGGACGTTACTGGAGCCCCGCCCGGCACCTTGGTGCC TCAGGAGCTACTGGAAGAAATGCTTTGGTTTTACCGCGTAGAAGATGCTACTCCCTGGAA TGCTTCCATGCTTGCCCTGGTGGCTGTGGTGGTCGTGATAAGCTTTGTCCTCTTGGGAAG AAGCATCCAGGCAAACAGAAATCCAAAGACGCTGCCATCGGAAAAACAGCATCCAGAAGC CCTCTACCTGGCTGAGGTTGGAGCCAAAGAGAATGACAACCTGACCATCCTAAGGGAGAC TTTGCTCTCAGAAAAGCCAAATTTGGCCCAGGTAGAAATGGAGTTAAAAGACAGGGATGT GCCGCACGGATTCCTTCTCGCAGACCCACGGGAATCTGAGAGCTAGTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCAGGTGCTTGATATGCTGGCCAAAGGATCTGAATGCTTTCTCTTTACTTGAGGACAACC GACAGCGAAGGTTCTGGCCTGGGCGTGTGCTAAATGCAGAGCTATCGGATGGGCCCAGAT GTCACGGGCCCTGCCTCACTGCCCCCCAGGTGACAGCCGTGTGGAAAACCCAGGTGCAAA GAACTTTGGGTGCTCCCCTGAAAGGAGAAGGAGGAAGAGAGAAAGCAGTGCTGCTCCCAA CGGCAGAGCAGGGGTCTTCAGGGCTTTTTGCTAAGGGCCAGAACCTAAGAGGCCAAGAGA CCAGTGGGAGGCCAAGGAAAGAGGCTAAGGACTTCGTCGTCAGAAACGTATCCCAACCAG GAACAGAGGCATGGACTTCAGTGAGGACGTTACTGGAGCCCCGCCCGGCACCTTGGTGCC TCAGGAGCTACTGGAAGAAATGCTTTGGTTTTACCGCGTAGAAGATGCTACTCCCTGGAA TGCTTCCATGCTTGCCCTGGTGGCTGTGGTGGTCGTGATAAGCTTTGTCCTCTTGGGAAG AAGCATCCAGGCAAACAGAAATCCAAAGACGCTGCCATCGGAAAAACAGCATCCAGAAGC CCTCTACCTGGCTGAGGTTGGAGCCAAAGAGAATGACAACCTGACCATCCTAAGGGAGAC TTTGCTCTCAGAAAAGCCAAATTTGGCCCAGGTAGAAATGGAGTTAAAAGACAGGGATGT GCCGCACGGATTCCTTCTCGCAGACCCACGGGAATCTGAGAGCTAGTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 651-767, - strand, RNAz p=0.635742 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 651-767, - strand, RNAz p=0.635742 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 249-470, gnl|bosTau2|chr10 (8417836-8418052) | |
| 249-470, gnl|canFam2|chr30 (32427772-32428031) | |
| 249-470, gnl|dasNov1|scaffold_258948 (338-70) | |
| 249-470, gnl|echTel1|scaffold_310815 (82930-83141) | |
| 249-470, gnl|hg17|chr15 (63129260-63129525) | |
| 249-470, gnl|Hg17|chr15 (63129285-63129495) | |
| 249-470, gnl|loxAfr1|scaffold_8923 (23329-23090) | |
| 249-470, gnl|mm7|chr9 (65445029-65444796) | |
| 249-470, gnl|Mm7|chr9 (65445005-65444805) | |
| 249-470, gnl|oryCun1|scaffold_200303 (120922-121175) | |
| 249-470, gnl|panTro1|chr16 (63599786-63600051) | |
| 249-470, gnl|rheMac2|chr7 (43523459-43523731) | |
| 249-470, gnl|rn3|chr8 (69683790-69683541) | |
| 556-767, gnl|bosTau2|chr10 (8421890-8422098) | |
| 556-767, gnl|canFam2|chr30 (32430586-32430773) | |
| 556-767, gnl|dasNov1|scaffold_99613 (7451-7272) | |
| 556-767, gnl|echTel1|scaffold_310815 (86838-87017) | |
| 556-767, gnl|hg17|chr15 (63132340-63132513) | |
| 556-767, gnl|Hg17|chr15 (63132354-63132556) | |
| 556-767, gnl|loxAfr1|scaffold_221655 (924-1108) | |
| 556-767, gnl|mm7|chr9 (65442661-65442482) | |
| 556-767, gnl|Mm7|chr9 (65442645-65442437) | |
| 556-767, gnl|monDom2|scaffold_12 (48247738-48247538) | |
| 556-767, gnl|oryCun1|scaffold_164017 (3887-3708) | |
| 556-767, gnl|panTro1|chr16 (63602932-63603105) | |
| 556-767, gnl|rheMac2|chr7 (43526545-43526724) | |
| 556-767, gnl|rn3|chr8 (69681237-69681061) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 249-470, gnl|bosTau2|chr10 (8417836-8418052) | |
| 249-470, gnl|canFam2|chr30 (32427772-32428031) | |
| 249-470, gnl|dasNov1|scaffold_258948 (338-70) | |
| 249-470, gnl|echTel1|scaffold_310815 (82930-83141) | |
| 249-470, gnl|hg17|chr15 (63129260-63129525) | |
| 249-470, gnl|Hg17|chr15 (63129285-63129495) | |
| 249-470, gnl|loxAfr1|scaffold_8923 (23329-23090) | |
| 249-470, gnl|mm7|chr9 (65445029-65444796) | |
| 249-470, gnl|Mm7|chr9 (65445005-65444805) | |
| 249-470, gnl|oryCun1|scaffold_200303 (120922-121175) | |
| 249-470, gnl|panTro1|chr16 (63599786-63600051) | |
| 249-470, gnl|rheMac2|chr7 (43523459-43523731) | |
| 249-470, gnl|rn3|chr8 (69683790-69683541) | |
| 556-767, gnl|bosTau2|chr10 (8421890-8422098) | |
| 556-767, gnl|canFam2|chr30 (32430586-32430773) | |
| 556-767, gnl|dasNov1|scaffold_99613 (7451-7272) | |
| 556-767, gnl|echTel1|scaffold_310815 (86838-87017) | |
| 556-767, gnl|hg17|chr15 (63132340-63132513) | |
| 556-767, gnl|Hg17|chr15 (63132354-63132556) | |
| 556-767, gnl|loxAfr1|scaffold_221655 (924-1108) | |
| 556-767, gnl|mm7|chr9 (65442661-65442482) | |
| 556-767, gnl|Mm7|chr9 (65442645-65442437) | |
| 556-767, gnl|monDom2|scaffold_12 (48247738-48247538) | |
| 556-767, gnl|oryCun1|scaffold_164017 (3887-3708) | |
| 556-767, gnl|panTro1|chr16 (63602932-63603105) | |
| 556-767, gnl|rheMac2|chr7 (43526545-43526724) | |
| 556-767, gnl|rn3|chr8 (69681237-69681061) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| cje (0.826173) | |
| ill (0.526778) | |
| jej (0.494609) | |
| sin (0.349895) | |
| duo (0.345602) | |
| nje (0.16592) | |
| cki (0.165235) | |
| nco (0.161734) | |
| lin (0.145603) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (0.826173) | |
| ill (0.526778) | |
| jej (0.494609) | |
| sin (0.349895) | |
| duo (0.345602) | |
| nje (0.16592) | |
| cki (0.165235) | |
| nco (0.161734) | |
| lin (0.145603) |