Non-Coding RNA Search

Ss1.1-rjej30b_k14.5

Sequence:


               
               TGCTTTCTTCCATTAAAAACGACCCATCTAGACTTGATTATCTAGTAAGGCTTGGTAATG
ACCATTTTCTTTTAGTTTTCAAAAGTCCTAGTAAATTCCCCTTGTTTTCAAATATAATAG
TAATAATTCTGATACATTTTATATTGGGGCACTGAAACCATGCTTCAGGATTCACTTGGA
GATGGGACTTAAAACCAAATACTGTGCTGATTTTTGAAGTGTATTTCCTTTCTATAAGTA
TTAGTTGGTAATAGCTACTTTTGCTTCACACTAACAAAATACAATAGAGGTATAAAAATA
ACAGTGGAGCTTTATTATGTAAAGAAAAACATCCAAACACACACATATAACTCCTAAAGG
CTTTCAGGGGGTTGAGAGTAAAATTTAGAATATAAACACATTTTACTAAAATTCCCCAGG
TGATTCTTATATGAATTACATTATAAATTTTAAGATAAATTATATATTGCAGATATTAAA
ACGTATTTTTAAGTTGTGACATTTATGCAGGACTACTGGCAGGAACAATATGAATATGTC
TGTTACCTTTAATTAATGGCACCCATTTACTAAGCAACAGGCTCAGCAACTGATCTCAAA
CCATAGTCAGACTAATATTGATATGGTACTACTTTGAATCTGTTGGCAGAACCATCTTCA
TAGAATACATGCTTCCAAAAGTTTGTCAGAACACTTTAAAATTACTCTACCATCATTAAA
CATCAGTTTTGAAATTATAGCCATCCATGATTTATTTATTTCAGACCAGATGACTACCAT
TCTATTCTAGCTTTTTTAATTTGTAAGGGGGGGGGTACTTAGAATGCACCTTTCTCCAGC
AAATTTCAGACTGAAAACATTACCTGCTATGGTAATGCACTTGCTAGTACTACACACCAT
GTATAAGAAAAACAAAGGCAAAATAGGTATGAAAAGAGAAAATCTCCTTTTGTTGTCCCT
CAAACTGAGTGAAGTTCTGAAATGTAGAAATGATCTCTGACATTTATAATGGATACTTGT
ATGTTCTTACTATGTAAATAAAATTGCTGGTATGAAGTGACATTAGAGTTTGTCAATAAA
TTAATTTTTCCTGACTTTATTCCCAGAAGAAGGTTTAGATAAACCATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTTTCTTCCATTAAAAACGACCCATCTAGACTTGATTATCTAGTAAGGCTTGGTAATG
ACCATTTTCTTTTAGTTTTCAAAAGTCCTAGTAAATTCCCCTTGTTTTCAAATATAATAG
TAATAATTCTGATACATTTTATATTGGGGCACTGAAACCATGCTTCAGGATTCACTTGGA
GATGGGACTTAAAACCAAATACTGTGCTGATTTTTGAAGTGTATTTCCTTTCTATAAGTA
TTAGTTGGTAATAGCTACTTTTGCTTCACACTAACAAAATACAATAGAGGTATAAAAATA
ACAGTGGAGCTTTATTATGTAAAGAAAAACATCCAAACACACACATATAACTCCTAAAGG
CTTTCAGGGGGTTGAGAGTAAAATTTAGAATATAAACACATTTTACTAAAATTCCCCAGG
TGATTCTTATATGAATTACATTATAAATTTTAAGATAAATTATATATTGCAGATATTAAA
ACGTATTTTTAAGTTGTGACATTTATGCAGGACTACTGGCAGGAACAATATGAATATGTC
TGTTACCTTTAATTAATGGCACCCATTTACTAAGCAACAGGCTCAGCAACTGATCTCAAA
CCATAGTCAGACTAATATTGATATGGTACTACTTTGAATCTGTTGGCAGAACCATCTTCA
TAGAATACATGCTTCCAAAAGTTTGTCAGAACACTTTAAAATTACTCTACCATCATTAAA
CATCAGTTTTGAAATTATAGCCATCCATGATTTATTTATTTCAGACCAGATGACTACCAT
TCTATTCTAGCTTTTTTAATTTGTAAGGGGGGGGGTACTTAGAATGCACCTTTCTCCAGC
AAATTTCAGACTGAAAACATTACCTGCTATGGTAATGCACTTGCTAGTACTACACACCAT
GTATAAGAAAAACAAAGGCAAAATAGGTATGAAAAGAGAAAATCTCCTTTTGTTGTCCCT
CAAACTGAGTGAAGTTCTGAAATGTAGAAATGATCTCTGACATTTATAATGGATACTTGT
ATGTTCTTACTATGTAAATAAAATTGCTGGTATGAAGTGACATTAGAGTTTGTCAATAAA
TTAATTTTTCCTGACTTTATTCCCAGAAGAAGGTTTAGATAAACCATA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               938-1117, gnl|bosTau2|chr22 (3435855-3435676)
               

               
               938-1117, gnl|Hg17|chr12 (32789634-32789796)
               

               
               938-1117, gnl|Mm7|chr16 (15855713-15855553)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               938-1117, gnl|bosTau2|chr22 (3435855-3435676)
               

               
               938-1117, gnl|Hg17|chr12 (32789634-32789796)
               

               
               938-1117, gnl|Mm7|chr16 (15855713-15855553)

Expressed library(ies): 19 entry(ies)

More info

Expressed library(ies): 19 entry(ies)

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               lin (0.728014)
               

               
               cbe (0.478469)
               

               
               sug (0.381874)
               

               
               vin (0.332557)
               

               
               kid (0.259471)
               

               
               ret (0.257467)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               csp (0.161186)
               

               
               isp (0.150376)
               

               
               nca (0.136874)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.728014)
               

               
               cbe (0.478469)
               

               
               sug (0.381874)
               

               
               vin (0.332557)
               

               
               kid (0.259471)
               

               
               ret (0.257467)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               csp (0.161186)
               

               
               isp (0.150376)
               

               
               nca (0.136874)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	938-1117, gnl\|bosTau2\|chr22 (3435855-3435676)
	938-1117, gnl\|Hg17\|chr12 (32789634-32789796)
	938-1117, gnl\|Mm7\|chr16 (15855713-15855553)

	lin (0.728014)
	cbe (0.478469)
	sug (0.381874)
	vin (0.332557)
	kid (0.259471)
	ret (0.257467)
	mas (0.210305)
	fcc (0.197785)
	aor (0.195274)
	sag (0.182715)
	fbs (0.175346)
	eye (0.170503)
	csp (0.161186)
	isp (0.150376)
	nca (0.136874)
	thg (0.126791)
	tra (0.123092)
	nbm (0.0993246)
	jej (0.0989218)