Non-Coding RNA Search

Ss1.1-rjej30b_l2.5

Sequence:


               
               TGAAAATCTGAGCACTGGAATCTTTTTTTTTTTGGATACATGTTGCTGGTTGGTTCTCTG
GGGTACAAATTCAGGTGGAGATTAATATTGGGATGAGTATTAGGGGTACCCTTGGGTTCA
ACATTTGTGGAGTCAAGAGGGAAGAAACATGATAGGGTAGAGGGAAAGATCAAGCAGGAC
TGCTGCCCAGACAACCTTAGCTGACCCCATGGGGTCTCTGGATGAAGGTGGCCCCTCAGG
GTTTCCTGACATGTCCAGTGGCCAGGCCTTTATACCTCCACCTGATGGGTCATTGCATGT
ATGTGGCCTGCAGAAGGGCTGGTGGTTTAAGGTTGCCCATTGGCAGCACTTCCAACAGCT
GGACAACAAGTCCTTGCAGGAAGGTCTGAATGGCACGTGTCCATGTCTCCCACCTATGTG
TCACAGCTACAGAGGTAGATGGTTAAGGTGTATGTACTGTGGAGGGATGCTCTTGGTGAC
TGCTGTAAGTCAAAATGATTAAATGTTTCTCCTAAATACCCTGTGGTCTGAAAATAAAGG
AGCAGGTCCACGTAGGGGAGAAACCCTCATTCTCTGGGGTCAGCCCAGTTTTCAGCTCTT
CAGGAAGCCATCAGTCATCATCCTAGGTAACTCGTGTTGCTGTAATGCCCTCAACACCTC
TCATTTGTTAAAATGAACCATACTTGGTTAATGTCCTATTTTAGCCATCTTTAGACACTT
ATTTTTTAAACAAGGGACCCTGCTTTTTCCATTTTGCACTGAGTCCTGTAAATTATGTAG
CCTGCCCTAACTATGAGTATTCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAAATCTGAGCACTGGAATCTTTTTTTTTTTGGATACATGTTGCTGGTTGGTTCTCTG
GGGTACAAATTCAGGTGGAGATTAATATTGGGATGAGTATTAGGGGTACCCTTGGGTTCA
ACATTTGTGGAGTCAAGAGGGAAGAAACATGATAGGGTAGAGGGAAAGATCAAGCAGGAC
TGCTGCCCAGACAACCTTAGCTGACCCCATGGGGTCTCTGGATGAAGGTGGCCCCTCAGG
GTTTCCTGACATGTCCAGTGGCCAGGCCTTTATACCTCCACCTGATGGGTCATTGCATGT
ATGTGGCCTGCAGAAGGGCTGGTGGTTTAAGGTTGCCCATTGGCAGCACTTCCAACAGCT
GGACAACAAGTCCTTGCAGGAAGGTCTGAATGGCACGTGTCCATGTCTCCCACCTATGTG
TCACAGCTACAGAGGTAGATGGTTAAGGTGTATGTACTGTGGAGGGATGCTCTTGGTGAC
TGCTGTAAGTCAAAATGATTAAATGTTTCTCCTAAATACCCTGTGGTCTGAAAATAAAGG
AGCAGGTCCACGTAGGGGAGAAACCCTCATTCTCTGGGGTCAGCCCAGTTTTCAGCTCTT
CAGGAAGCCATCAGTCATCATCCTAGGTAACTCGTGTTGCTGTAATGCCCTCAACACCTC
TCATTTGTTAAAATGAACCATACTTGGTTAATGTCCTATTTTAGCCATCTTTAGACACTT
ATTTTTTAAACAAGGGACCCTGCTTTTTCCATTTTGCACTGAGTCCTGTAAATTATGTAG
CCTGCCCTAACTATGAGTATTCAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               102-415, - strand, RNAz p=0.999761

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               102-415, - strand, RNAz p=0.999761

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               27-804, gnl|bosTau2|chr12 (37192925-37192157)
               

               
               27-804, gnl|Hg17|chr13 (94464950-94464090)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               27-804, gnl|bosTau2|chr12 (37192925-37192157)
               

               
               27-804, gnl|Hg17|chr13 (94464950-94464090)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               bla (0.124347)
               

               
               jej (0.0989218)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.124347)
               

               
               jej (0.0989218)

	27-804, gnl\|bosTau2\|chr12 (37192925-37192157)
	27-804, gnl\|Hg17\|chr13 (94464950-94464090)