Non-Coding RNA Search

Ss1.1-rjej31b_c8.5

Sequence:


               
               TCGGCCTCCAGAGTTCAGCAGGCCCGCTGGTTGAGTGGCCTCTCCCCTCAGCCTTGCCCC
GAAGAGCCTGCAGTGCCCTGGGAGCAGATTGCAGTCCGCTTATTTGACCAGGAGAGTTGT
ATGAGGTTGCAGGAGGGGCCCGGGAAGCCACCCCCCGTGTCAACTCCTTGTGGACCCCAC
CCCAGCAGAACCCCCAGCCTCCAGGAGATAAAGATGCAGCGCACCAGTATCCTGCAACAG
CTTTTGCGACAGGAGGTAGAGGGGCTGGCGGGGGGCCAGTGTGCCCCCCTTAATGGAGGC
TCCTCTCTGGATATGGCTGAACTTCAGCCCCTGCTGGCTGAGATTTCTAGAACTCTGAAT
GCCCCAGAGAGTAATAATTCTGGGGCTTTTCAGCCTCCCAGACCGTTGCATCCCTCTGCG
ATGCCAGAGCCCTGCCTCCTAGAGGCGTGTGGGGAGGAACCAGAGCCCTGCCCGGAAGCA
GAGCCAGGGCCCCCAGAGTCATGCCCTAGGAGGGAACCTGGGATATCAGAACCCTCCACC
CAGGAACAGCTCGAGGTGTTAGAGCCCTGCCCTCCCGGAGCACCTAGACCCCTTCAGGCC
TGCCCCCTGGGGCAGACAAGGCCCGCAGAGCCCTCCCCTAAGGTAGAGACGGAGAGGGCT
CCCCAAAGTCCAGAGTCCAGCCTGCAGCCCTCCTGCGGTCAGCGGGCTCCAGCGACCACC
AGCTTGACCTTCTCCTCCCAACGCCCGCTTTGTGCCAGCCCCCCTATCCACTCGCTCCAG
TCTCTGAAGCCCCCAACAGGCCAAGCAGACCCCCACCATCTGGCCCCTCGAACCCTGGCC
CTGAGGCAGCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGGCCTCCAGAGTTCAGCAGGCCCGCTGGTTGAGTGGCCTCTCCCCTCAGCCTTGCCCC
GAAGAGCCTGCAGTGCCCTGGGAGCAGATTGCAGTCCGCTTATTTGACCAGGAGAGTTGT
ATGAGGTTGCAGGAGGGGCCCGGGAAGCCACCCCCCGTGTCAACTCCTTGTGGACCCCAC
CCCAGCAGAACCCCCAGCCTCCAGGAGATAAAGATGCAGCGCACCAGTATCCTGCAACAG
CTTTTGCGACAGGAGGTAGAGGGGCTGGCGGGGGGCCAGTGTGCCCCCCTTAATGGAGGC
TCCTCTCTGGATATGGCTGAACTTCAGCCCCTGCTGGCTGAGATTTCTAGAACTCTGAAT
GCCCCAGAGAGTAATAATTCTGGGGCTTTTCAGCCTCCCAGACCGTTGCATCCCTCTGCG
ATGCCAGAGCCCTGCCTCCTAGAGGCGTGTGGGGAGGAACCAGAGCCCTGCCCGGAAGCA
GAGCCAGGGCCCCCAGAGTCATGCCCTAGGAGGGAACCTGGGATATCAGAACCCTCCACC
CAGGAACAGCTCGAGGTGTTAGAGCCCTGCCCTCCCGGAGCACCTAGACCCCTTCAGGCC
TGCCCCCTGGGGCAGACAAGGCCCGCAGAGCCCTCCCCTAAGGTAGAGACGGAGAGGGCT
CCCCAAAGTCCAGAGTCCAGCCTGCAGCCCTCCTGCGGTCAGCGGGCTCCAGCGACCACC
AGCTTGACCTTCTCCTCCCAACGCCCGCTTTGTGCCAGCCCCCCTATCCACTCGCTCCAG
TCTCTGAAGCCCCCAACAGGCCAAGCAGACCCCCACCATCTGGCCCCTCGAACCCTGGCC
CTGAGGCAGCGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               217-495, + strand, RNAz p=0.994743

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               217-495, + strand, RNAz p=0.994743

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               407-548, - strand, RNAmicro p=0.999963

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               407-548, - strand, RNAmicro p=0.999963

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               217-507, gnl|bosTau2|chr5 (24502515-24502799)
               

               
               217-507, gnl|Hg17|chr12 (48010192-48010641)
               

               
               217-507, gnl|Mm7|chr15 (99067530-99067808)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               217-507, gnl|bosTau2|chr5 (24502515-24502799)
               

               
               217-507, gnl|Hg17|chr12 (48010192-48010641)
               

               
               217-507, gnl|Mm7|chr15 (99067530-99067808)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cov (0.132153)
               

               
               jej (0.0989218)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.132153)
               

               
               jej (0.0989218)

	217-507, gnl\|bosTau2\|chr5 (24502515-24502799)
	217-507, gnl\|Hg17\|chr12 (48010192-48010641)
	217-507, gnl\|Mm7\|chr15 (99067530-99067808)